View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13983_low_32 (Length: 239)
Name: NF13983_low_32
Description: NF13983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13983_low_32 |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 48714003 - 48714220
Alignment:
| Q |
19 |
ccaattccaaccttctcaatagccattgctaatgcaattgtagcatcataagcccatattccaaaaatgttcaaatttgtgtcaacaagttttggattgt |
118 |
Q |
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| T |
48714003 |
ccaattccaactttctcaatagccattgctaatgcaattgtagcatcataagcccatattccaaaaatgttcaaatttgtgtcaacaagttttggattgt |
48714102 |
T |
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| Q |
119 |
cacttatgaatttccttttccatctaactctaaaatcatctagnnnnnnngttctaggaatataagtcctaacacccaacactccttccattgattccct |
218 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
48714103 |
cacttatgaatttccttttccatctaaccctaaaatcatctagtttttttgttctaggaatataagtcctaagacccaacactccttccattgattccct |
48714202 |
T |
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| Q |
219 |
cacattaaaactcaatga |
236 |
Q |
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|||||||||||||||||| |
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| T |
48714203 |
cacattaaaactcaatga |
48714220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 48701897 - 48702114
Alignment:
| Q |
19 |
ccaattccaaccttctcaatagccattgctaatgcaattgtagcatcataagcccatattccaaaaatgttcaaatttgtgtcaacaagttttggattgt |
118 |
Q |
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|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48701897 |
ccaattccaactttctcaatagccattgctaatgcaattgtagcatcataagcccatattccaaaaatgttcaaatttgtgtcaacaagttttggattgt |
48701996 |
T |
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| Q |
119 |
cacttatgaatttccttttccatctaactctaaaatcatctagnnnnnnngttctaggaatataagtcctaacacccaacactccttccattgattccct |
218 |
Q |
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|| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
48701997 |
catttatgaatttacttttccatctaactctaaaatcatctagtttttttgttctaggaatataagtcctaagacccaacactccttccattgattccct |
48702096 |
T |
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| Q |
219 |
cacattaaaactcaatga |
236 |
Q |
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|||||||||||||||||| |
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| T |
48702097 |
cacattaaaactcaatga |
48702114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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