View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13983_low_4 (Length: 599)
Name: NF13983_low_4
Description: NF13983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13983_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 391; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 119 - 595
Target Start/End: Complemental strand, 12062083 - 12061609
Alignment:
| Q |
119 |
tttggaatagattttgctctcatgcaatgtcaagtgctcacattcaatataattatgagtacttcaataaaatctccatcaacgtcaacaaagatacatt |
218 |
Q |
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| T |
12062083 |
tttggaatagattttgctctcatgcaatgtcaagtgctcacattcaatataattatgagtacttcaataaaatctccatcaacgtcaacaaagatacatt |
12061984 |
T |
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| Q |
219 |
tggaattctagtgtcggtctaaaagatacaattcaattcagagataggtcatggcctcttacatgcttttggtggctgagattgtttcactctcaccaac |
318 |
Q |
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| T |
12061983 |
tagaattctagtgtcggtctaaaagatacaattcaattcagagctaggtcatgg-ctcttacatgcttttggtggctgagattgtttcactctcaccaac |
12061885 |
T |
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| Q |
319 |
tgagggatgttgaaggaatcaacatctccccatcagttttttcaactttcctctcatcaattctgttaatattgatgtaggattaccaacattgatacct |
418 |
Q |
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| T |
12061884 |
tgagggatgttgaaggaatcaacatctccccatcagttttttcaactttcctcttatcaattgtgttaatattgatgtaggattgccaacattgatacct |
12061785 |
T |
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| Q |
419 |
ttattagnnnnnnnnnnnaacaagccaatcaaatccatcgaaattggtaaatcaaaaatcaaaattgagacctaacacactctaagattttaagccaaca |
518 |
Q |
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| T |
12061784 |
ttattag-ttttttttttaacaagccaatcaaatccatcgaaattggtaaatcaaaaatcaaaatcgagacctaacacactctaagattttaagccaaca |
12061686 |
T |
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| Q |
519 |
ccactaaaccaacttaagatatgttattcgcattttcaactaatgggcattgacacatgattaacatattcttggac |
595 |
Q |
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| T |
12061685 |
ccactaaaccaacttaagatatgttattcgcattttcaactaatgtgcattgacacatgattgacattttattggac |
12061609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 16 - 111
Target Start/End: Complemental strand, 12062280 - 12062186
Alignment:
| Q |
16 |
atctttgtcttttttcctttacggggtaccctcgtcttgttcattagcttttttataaatccattttcttatcaaaatcaatattatagaaatcct |
111 |
Q |
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| T |
12062280 |
atcttcgtcttttttccattacggggtaccctcgtcttgttcattagcttttttataaatccattttcttat-aaaatcaatattatagaaatcct |
12062186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 16 - 111
Target Start/End: Complemental strand, 12077127 - 12077032
Alignment:
| Q |
16 |
atctttgtcttttttcctttacggggtaccctcgtcttgttcattagcttttttataaatccattttcttatcaaaatcaatattatagaaatcct |
111 |
Q |
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| T |
12077127 |
atctttgtcttttttccattacggggtacccttgtcttgttcattagcttttttataaatccattttcttatcaaattcaatgttatagaaatcct |
12077032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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