View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13983_low_5 (Length: 577)
Name: NF13983_low_5
Description: NF13983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13983_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 175 - 559
Target Start/End: Complemental strand, 13599324 - 13598940
Alignment:
| Q |
175 |
ggacgaatatacgaacaaatttacttcatcgaagttaataacataaaatagaaaccgcatataaaagtgacaaaactaaagtgattaaagtaccatgtct |
274 |
Q |
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| T |
13599324 |
ggacgaatatacgaacaaactcacatcatccaagttaataacataaaatagaaaccgcatataaaagtgacaaaactaaagtgattaaagtaccatgtct |
13599225 |
T |
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| Q |
275 |
tctaatttagtttgttcttttatatataacaaatattatgtgtgtgt--atatttcaaataatataaaacagtacctatattaactaannnnnnnnnnnn |
372 |
Q |
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| T |
13599224 |
tctaatttagtttgttcttttatatataacaaatattatgtgtgtgtatatatttcaaataatataaaatagtacctatattaactaa-tttttttattt |
13599126 |
T |
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| Q |
373 |
nnacatgattaattatagatttcgattccatataaaaaattataaaattcaatcgaaacactttatattactgtaaatcattttaaactattttgaatga |
472 |
Q |
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| T |
13599125 |
ttacatgattaattataaatttcgattccatataaaaaattataaaattcaatcgaaacattttatattaatgtaaatcattttaaactattttgaatga |
13599026 |
T |
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| Q |
473 |
taaaaatttaatccaaatttataaaattatatcgttatgaaaaaccttgacaaagttcacctccttctaaaaactcttaacacgact |
559 |
Q |
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| T |
13599025 |
taaaaatttaatccaaatttataaaattacatcgttatgaaaagccttgacaaagttcagatccttct-aaaactcttaacacgact |
13598940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 175 - 559
Target Start/End: Original strand, 9425330 - 9425717
Alignment:
| Q |
175 |
ggacgaatatacgaacaaatttacttcatcgaagttaataacataaaatagaaaccgcatataaaagtgacaaaactaaagtgattaaagtaccatgtct |
274 |
Q |
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| T |
9425330 |
ggacgaatatgcgaacaaactcacatcatccaagttaataacataaaatagaaactgcatataaaagtgacaaaagtaaagtgattaaagtaccatgtct |
9425429 |
T |
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| Q |
275 |
tctaatttagtttgttcttttatatataacaaatattatgtgtgtgtatat----ttcaaataatataaaacagtacctatattaactaannnnnnnnnn |
370 |
Q |
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| T |
9425430 |
tctaatttagtttgttgttttatatgtaacaaatattatgtgtgtgtatatatatttcaaataatataaaatagtacctatattaattaatttttttatt |
9425529 |
T |
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| Q |
371 |
nnnnacatgattaattatagatttcgattccatataaaaaattataaaattcaatcgaaacactttatattactgtaaatcattttaaactattttgaat |
470 |
Q |
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| T |
9425530 |
tttg-catgattaattataaatttcgattccatataaaaaattacaaaattcaatcgaaacactttatattaatgtaaatcattttaaactattttgaat |
9425628 |
T |
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| Q |
471 |
gataaaaatttaatccaaatttataaaattatatcgttatgaaaaaccttgacaaagttcacctccttctaaaaactcttaacacgact |
559 |
Q |
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| T |
9425629 |
gataaaaatttaatccaaatttgtaaaattacatcattatgaaaagccttgacaaagttcacctccttctaaaaactcttaacacgact |
9425717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 14 - 146
Target Start/End: Complemental strand, 13599486 - 13599354
Alignment:
| Q |
14 |
agggacctgaatgacaattttctagtagtaattattgccatatcaaaataatgatcagatggataaatttcattttttatactaaaaataaggtattgat |
113 |
Q |
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| T |
13599486 |
agggacctgaatgacaattttctagtagtaattattgccatatcaaaataatgatcagatggataaatttcattttttatactaaaaataaggtattgat |
13599387 |
T |
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| Q |
114 |
tcattaaaatcggtagaatacatcaaatataac |
146 |
Q |
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| T |
13599386 |
tcattaaaatcggtagaatacatcaaatataac |
13599354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 23 - 146
Target Start/End: Original strand, 9425178 - 9425301
Alignment:
| Q |
23 |
aatgacaattttctagtagtaattattgccatatcaaaataatgatcagatggataaatttcattttttatactaaaaataaggtattgattcattaaaa |
122 |
Q |
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| T |
9425178 |
aatgacaattttctagtagtaattattgccatatcaaaataatgatcagatggataaatttcattttttatactaaaaataaggtattgattcattaaaa |
9425277 |
T |
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| Q |
123 |
tcggtagaatacatcaaatataac |
146 |
Q |
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| T |
9425278 |
ttgatagaatacattaaatataac |
9425301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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