View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13983_low_6 (Length: 558)
Name: NF13983_low_6
Description: NF13983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13983_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 19 - 403
Target Start/End: Original strand, 38933884 - 38934266
Alignment:
| Q |
19 |
gagtgggaggtttatgttgtggaggtttcctattatgggaagagatattgatggacctggtggaaggtttttgaaatttcttctttggagtaaaagtttc |
118 |
Q |
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| T |
38933884 |
gagtgggaggtttatgttgtggaggtttcctattatgggaagagatattgatggacctggtggaaggtttttgaactttcttctttggagtaaaagtttc |
38933983 |
T |
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| Q |
119 |
aaggttacaatgaaactaagggaaaggagtgagtaatataacaatggtgttattactaacattgtattatatatattggttattgtgtttttagctgagt |
218 |
Q |
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| T |
38933984 |
aaggttacaatgaaactaagggaaaggagtgagtaatataacaatggtgttattactaacattgtattata----ttggttattgtgtttttagctgagt |
38934079 |
T |
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| Q |
219 |
ttagagatatcgatgcatggttttatagttgagttgaggaatatattgagaaatgaaaactgaacgaaatttgaaacaggtggagagatattggaggctg |
318 |
Q |
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| T |
38934080 |
ttagagatatcgatgcttggttttatagttgagttgaggaatatattgagaaatgaaaactgaacgaaatttgaaacaggtggagagatattagaggttg |
38934179 |
T |
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| Q |
319 |
ccaatttatcaacacaaggacattgaataatgaaaagagaaaaataaaaatgttttaattttctttg--ttgagagaagaaatgtag |
403 |
Q |
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| T |
38934180 |
ccaatttatcaacaaaaggacattgaataatgaaaagagaaaaataaaaatgttttaattttctttgttttgagagaagaaatgtag |
38934266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 19 - 162
Target Start/End: Original strand, 12156052 - 12156195
Alignment:
| Q |
19 |
gagtgggaggtttatgttgtggaggtttcctattatgggaagagatattgatggacctggtggaaggtttttgaaatttcttctttggagtaaaagtttc |
118 |
Q |
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| T |
12156052 |
gagtgggaggttgatgtagtggaggtgtcctattaagggaagagttattgatggacttggtggaaggtttttaaactttcttctttgtagtaaaagtttc |
12156151 |
T |
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| Q |
119 |
aaggttacaatgaaactaagggaaaggagtgagtaatataacaa |
162 |
Q |
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| T |
12156152 |
aaggtaaaaatgaaactaagggaaaggagggaataatataacaa |
12156195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 474 - 517
Target Start/End: Original strand, 38934278 - 38934321
Alignment:
| Q |
474 |
caagaagaagaaggaaatgtcttagttgatgatgcgagataaag |
517 |
Q |
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| T |
38934278 |
caagaagaagaaggaaatgtcttagttgatgatgcgagataaag |
38934321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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