View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13983_low_8 (Length: 520)
Name: NF13983_low_8
Description: NF13983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13983_low_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 413; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Original strand, 39539912 - 39540339
Alignment:
| Q |
1 |
cgacaaatcgactgagtaggatgagcagttaggaccaaatcaacagtttgactcttcaaagcatcaaagacttccagaggagtcttcttgagttcagtca |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39539912 |
cgacgaatcgactgagtaggatgagcagttaggaccaaatcaacagtttgactcttcaaagcatcaaagacttccagaggagtcttcttgagttcagtca |
39540011 |
T |
|
| Q |
101 |
caagcttcttgaatgtctcttcaatatctgactcagttatggcagaattttcatcagcaaaatcacctttcttcagtaacttgatccttcttctatatgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39540012 |
caagcttcttgaatgtctcttcaatatctgactcagttatggcagaattttcatcagcaaaatcacctttcttcagtaacttgatccttcttctatatgc |
39540111 |
T |
|
| Q |
201 |
aatttgaacttcttcagccaagtttgccaaattaagcatgtgggaaaatgatttagctataacaatagaatctccagcatcaagaccagttagcatattc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39540112 |
aatttgaacttcttcagccaagtttgccaaattaagcatgtgggaaaatgatttagctataacaatagaatctccagcatcaagaccagttagcatattc |
39540211 |
T |
|
| Q |
301 |
ccaagttcctccaatttctctggcctatgctccccttcatactctgctgatagctcataacaatcttgaacctatcaaccatcaaattaccaaaactc-- |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39540212 |
ccaagttcctccaatttctctggcctatgctccccttcatactctgctgatagctcataacaatcttgaacctatcaaccatcaaattaccaaaactctt |
39540311 |
T |
|
| Q |
399 |
agccacaagttcataaatctactcagtc |
426 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
39540312 |
agccacaagttcataaatctactcagtc |
39540339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 447 - 478
Target Start/End: Original strand, 39540352 - 39540383
Alignment:
| Q |
447 |
cattgattttatgtccactaatttactaacat |
478 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
39540352 |
cattgattttatgtccactaatttactaacat |
39540383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 32095255 - 32095182
Alignment:
| Q |
9 |
cgactgagtaggatgagcagttaggaccaaatcaacagtttgactcttcaaagcatcaaagacttccagaggag |
82 |
Q |
| |
|
||||||||||||||||||||| || || | |||||| || || ||||||| |||||||| |||||| |||||| |
|
|
| T |
32095255 |
cgactgagtaggatgagcagtaagaacaagatcaacggtctggttcttcaatgcatcaaaaacttcctgaggag |
32095182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 164; Significance: 2e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 10 - 389
Target Start/End: Original strand, 30910358 - 30910737
Alignment:
| Q |
10 |
gactgagtaggatgagcagttaggaccaaatcaacagtttgactcttcaaagcatcaaagacttccagaggagtcttcttgagttcagtcacaagcttct |
109 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| |||| | |||||||| ||| |
|
|
| T |
30910358 |
gactgggtaggatgagcagttaggaccaaatcaacagtttggctcttcaaagcatcaaagacttcaagaggggtcttcttcagttgattcacaagcctct |
30910457 |
T |
|
| Q |
110 |
tgaatgtctcttcaatatctgactcagttatggcagaattttcatcagcaaaatcacctttcttcagtaacttgatccttcttctatatgcaatttgaac |
209 |
Q |
| |
|
|||| ||||||||||| ||||||||||| |||||||| || |||||| ||||||| || ||||| | |||||| |||||||| | || ||||||||||| |
|
|
| T |
30910458 |
tgaaggtctcttcaatgtctgactcagtgatggcagagttctcatcaccaaaatcccccttctttaataacttaatccttctgcggtaggcaatttgaac |
30910557 |
T |
|
| Q |
210 |
ttcttcagccaagtttgccaaattaagcatgtgggaaaatgatttagctataacaatagaatctccagcatcaagaccagttagcatattcccaagttcc |
309 |
Q |
| |
|
|||||| ||||| || ||||| ||||||||||| ||||| || || || || ||||||||||| |||||||||||||| || ||||| ||||| |||||| |
|
|
| T |
30910558 |
ttcttctgccaaattggccaagttaagcatgtgagaaaaagacttggcaatgacaatagaatccccagcatcaagaccggtcagcatgttcccgagttcc |
30910657 |
T |
|
| Q |
310 |
tccaatttctctggcctatgctccccttcatactctgctgatagctcataacaatcttgaacctatcaaccatcaaatta |
389 |
Q |
| |
|
||||| |||| || ||| | |||||||||||| || || ||||||||||| | ||||||||| | | |||||||||| |
|
|
| T |
30910658 |
tccaacttctgagggttattgttcccttcatactcagcagacagctcataacagttttgaacctagccaacatcaaatta |
30910737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 199 - 281
Target Start/End: Complemental strand, 22565024 - 22564942
Alignment:
| Q |
199 |
gcaatttgaacttcttcagccaagtttgccaaattaagcatgtgggaaaatgatttagctataacaatagaatctccagcatc |
281 |
Q |
| |
|
|||||||| || || ||||| ||||| ||||| |||||||| || ||||| ||||| || | ||||||||||||||||||||| |
|
|
| T |
22565024 |
gcaatttggacctcctcagctaagttagccaagttaagcatatgagaaaaggatttggcaacaacaatagaatctccagcatc |
22564942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University