View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13984_high_1 (Length: 798)
Name: NF13984_high_1
Description: NF13984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13984_high_1 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 505; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 100 - 798
Target Start/End: Original strand, 941786 - 942496
Alignment:
| Q |
100 |
gaaagagtgaaggatgagtagatccacattgttcaagataagactgaagtttataagtcaatctacacaaaaaatttccctcgcaccaatatggttgaaa |
199 |
Q |
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| T |
941786 |
gaaagagtgaaggatgagtagatccacattgttcaagataagactgaagtttataagtcaatctacacaaaaaatttccctcgcaccaatatggttgaaa |
941885 |
T |
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| Q |
200 |
ttgacatactagtcctttttcactaactctcgaattcttcgaaccaaaaaatgttctcactaaggttattaaaaccctaatccatgcaagaataagaata |
299 |
Q |
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| T |
941886 |
ttgacatactagtcctttttcactaactctcgaattcttcgaaccaaaaaatgttctcactaaggttattaaaaccctaatccatgcaagaataagaata |
941985 |
T |
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| Q |
300 |
acattgaggcaaacaattagaagaaattaatcaagattctctaatgagtctttaaaatttattttggacctcgatacacaattggtccgcatttgacatt |
399 |
Q |
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| T |
941986 |
acattgaggcaaacaattagaagaaattaatcaagattctctaatgagtctttaaaatttattttggacctcgatacacatttggtccgcatttgacatt |
942085 |
T |
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| Q |
400 |
tgtttccattcatttcttggtttaattgattttggaatttagaaaagatac---------taagtcgaaatatgttttgttcgactttcattaccaatta |
490 |
Q |
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| T |
942086 |
tgtttccattcatttcttggtttaattgattttggaatttagagaagatacttaactgtttaagtcgaaatatgttttgttcgactttcattaccaatta |
942185 |
T |
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| Q |
491 |
tggtggcttgatcctattaaccgtataactgca-ttacttaacttatgtgcnnnnnnnnnnnnnnnnnnnnnntactattattgtactctggttctctaa |
589 |
Q |
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| T |
942186 |
tggtggcttgatcctattaaccgtataactgcagttacttaacttatgtgcttttgttttttgtttgcttttatactattattgtactttggttctctga |
942285 |
T |
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| Q |
590 |
gatacattctttagtacaccttgtgttgtagtggtctgttttggtttgttaataatatatttgtgctcttttttcactc-nnnnnnnnnta-atatttgt |
687 |
Q |
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| T |
942286 |
cagacattctttagtacaccttgtgttgctgtggtctgttttggtttgttaataatatatttgtgctcttttttcactcaaaaaaaatatatatatttgt |
942385 |
T |
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| Q |
688 |
gatctttttggcctttnnnnnnngaatgtttaattgctttgatgatttattttttgaggggtgctttgatgaattaattatataggtggtttatgccgtt |
787 |
Q |
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| T |
942386 |
gatctttttggcctttaaaaaaagaatgtttaattgctttgatgatttattttttgaggggtgctttaatgaattaattatataggtggtttatgccgtt |
942485 |
T |
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| Q |
788 |
aaatattcttc |
798 |
Q |
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| T |
942486 |
aaatattcttc |
942496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 941695 - 941762
Alignment:
| Q |
17 |
agtgacttcagaggtatcatcaactaagagatcttcaactcatccaaatgaatattgtgaaggatgag |
84 |
Q |
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| T |
941695 |
agtgacttcagaggtatcatcaactaagagatcttcaactcatccaaatgaatattgtgaaggatgag |
941762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 451 - 523
Target Start/End: Original strand, 38037573 - 38037645
Alignment:
| Q |
451 |
taagtcgaaatatgttttgttcgactttcattaccaattatggtggcttgatcctattaaccgtataactgca |
523 |
Q |
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| T |
38037573 |
taagtcgaaatatgttttgttcgattttgattaccaattatggaggttaaatcctatttaccgtttaactgca |
38037645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 596 - 643
Target Start/End: Original strand, 38037717 - 38037764
Alignment:
| Q |
596 |
ttctttagtacaccttgtgttgtagtggtctgttttggtttgttaata |
643 |
Q |
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| T |
38037717 |
ttctttcgtataccttgtgttgaagtggtatgttttggtttgttaata |
38037764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 456 - 523
Target Start/End: Complemental strand, 12343371 - 12343304
Alignment:
| Q |
456 |
cgaaatatgttttgttcgactttcattaccaattatggtggcttgatcctattaaccgtataactgca |
523 |
Q |
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| T |
12343371 |
cgaaataagttttgttcgactttgattaccaattatggaggattgatcttattaactgtttaactgca |
12343304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 451 - 507
Target Start/End: Complemental strand, 7129327 - 7129271
Alignment:
| Q |
451 |
taagtcgaaatatgttttgttcgactttcattaccaattatggtggcttgatcctat |
507 |
Q |
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| T |
7129327 |
taagtcgaaatatgttttattcgactttgattaccaattctggaggcttaatcctat |
7129271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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