View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13984_high_12 (Length: 483)
Name: NF13984_high_12
Description: NF13984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13984_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 8 - 460
Target Start/End: Original strand, 48643030 - 48643482
Alignment:
| Q |
8 |
agataatactggaatacaactatattgctgcttgtgatgcctatagcatactgattttattaggttgtcattgtctatggcttttcaaaaaggttatttc |
107 |
Q |
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| T |
48643030 |
agataatactggaatacaactatattgctgcttgtgatgcctatagcatactgattttattaggttgtcattgtctatggcttttcaaaaaggttatttc |
48643129 |
T |
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| Q |
108 |
attttaataggaatggaatagtaacaacacgttatgcatcattgaatttcataaaccgttagttactggcttgtttttgaaacatgtgaaagttcaatta |
207 |
Q |
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| T |
48643130 |
attttaatagggatggaatagtaacaacacgttatgcatcattgaatttcataaaccgttagttactggcttgtttttgaaacatgtgaaagttcaatta |
48643229 |
T |
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| Q |
208 |
gtaactcactttcttttgtaggcaaatgttagtaagtgggtgattatgtcaattttcaagatttgaatcttaagcctctataaaactcgtttaataccca |
307 |
Q |
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| T |
48643230 |
gtaactcactttcttttgtaggcaaatgttagtaagtgggtgattatgtcaattttcaagatttgaatcttaagcctctataaaactcgtttaataccca |
48643329 |
T |
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| Q |
308 |
ttattttagctatttccttccgaacactaataatgtgcttatttgttgaacgacatattaatccaatttcgagttgataattaactagttccgagtttat |
407 |
Q |
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| T |
48643330 |
ttattttagctatttccttccgaacactaataatgtgcttatttgttgaacgacatattaatccaatttcgagttgataattaactagttccgagtttat |
48643429 |
T |
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| Q |
408 |
atgacatacatgattaatttgcttctttctagctatgtgagtatccattatct |
460 |
Q |
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| T |
48643430 |
atgacatacatgattaatttgcttctttctagctatgtgagtatccattatct |
48643482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 215 - 263
Target Start/End: Complemental strand, 27147527 - 27147479
Alignment:
| Q |
215 |
actttcttttgtaggcaaatgttagtaagtgggtgattatgtcaatttt |
263 |
Q |
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| T |
27147527 |
acttttttttataggcaaatgttagtaagttagtgattatgttaatttt |
27147479 |
T |
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