View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13984_high_20 (Length: 366)

Name: NF13984_high_20
Description: NF13984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13984_high_20
NF13984_high_20
[»] chr5 (4 HSPs)
chr5 (14-347)||(14240551-14240884)
chr5 (14-347)||(41451560-41451893)
chr5 (14-347)||(41438391-41438724)
chr5 (14-347)||(14372474-14372807)
[»] chr3 (4 HSPs)
chr3 (67-347)||(22750268-22750548)
chr3 (31-335)||(22726961-22727265)
chr3 (45-335)||(22739732-22740022)
chr3 (217-335)||(22740747-22740865)
[»] chr8 (6 HSPs)
chr8 (227-347)||(2301225-2301345)
chr8 (227-347)||(2325444-2325564)
chr8 (277-331)||(5282655-5282709)
chr8 (277-331)||(5290242-5290296)
chr8 (277-331)||(14949405-14949459)
chr8 (277-331)||(15125916-15125970)
[»] scaffold0196 (1 HSPs)
scaffold0196 (278-329)||(13502-13553)
[»] chr6 (3 HSPs)
chr6 (223-329)||(11672961-11673067)
chr6 (265-329)||(11663919-11663983)
chr6 (247-323)||(11756738-11756814)
[»] scaffold0019 (1 HSPs)
scaffold0019 (248-329)||(7947-8028)


Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 14 - 347
Target Start/End: Complemental strand, 14240884 - 14240551
Alignment:
Q  14 agatatcaggcgttgttaaggtttgtggagaaaaggcctacgttgctcaatcaccatggattcaaagtggcaagatagaggataatatattgtttggcaa 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14240884 agatatcaggcgttgttaaggtttgtggagaaaaggcctacgttgctcaatcaccatggattcaaagtggcaagatagaggataatatattgtttggcaa 14240785  T
Q  114 acaaatggttagggaaaggtatgaaaaggtactcgaagcatgctccttacagaaggatctggaaatcttgtcatttggtgatcaaacagttataggcgag 213  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  14240784 acaaatggttagggaaaggtatgaaaaggtactcgaagcttgctacttaaagaaggatctggaaatcttgtcatttggtgatcaaacggttataggcgag 14240685  T
Q  214 cgcggaataaatttgagtggtggacagaaacaaagaatacaaattgcgcgcgctctttaccaagatgctgatatttatctatttgatgatccttttagtg 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  14240684 cgcggaataaatttgagtggtggacagaaacaaagaatacaaattgcgcgcgctctttaccaagatgctgatatctatctatttgatgatccttttagtg 14240585  T
Q  314 ctgtggatgctcatacaggatctcacctttttaa 347  Q
    ||||||||||||||||||||||||||||||||||    
T  14240584 ctgtggatgctcatacaggatctcacctttttaa 14240551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 14 - 347
Target Start/End: Complemental strand, 41451893 - 41451560
Alignment:
Q  14 agatatcaggcgttgttaaggtttgtggagaaaaggcctacgttgctcaatcaccatggattcaaagtggcaagatagaggataatatattgtttggcaa 113  Q
    |||||||||||||  ||||||||||||||  ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||  |    
T  41451893 agatatcaggcgtccttaaggtttgtggaacaaaggcctatgtcgctcaatcaccatggattcaaagtggcaagatagaggataatatattgtttggtga 41451794  T
Q  114 acaaatggttagggaaaggtatgaaaaggtactcgaagcatgctccttacagaaggatctggaaatcttgtcatttggtgatcaaacagttataggcgag 213  Q
    | | ||||||||||||||||||||||||||||| |||||||| |||||  |||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  41451793 aaacatggttagggaaaggtatgaaaaggtacttgaagcatgttccttgaagaaggatttggaaatcttgtcatttggtgatcagacagttataggcgag 41451694  T
Q  214 cgcggaataaatttgagtggtggacagaaacaaagaatacaaattgcgcgcgctctttaccaagatgctgatatttatctatttgatgatccttttagtg 313  Q
    || ||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  41451693 cgtggaataaatttgagtggtggacagaaacaaagaatacaaatagctcgtgctctttaccaagatgctgatatctatctatttgacgatccttttagtg 41451594  T
Q  314 ctgtggatgctcatacaggatctcacctttttaa 347  Q
    |||| |||||||||||||||||||||||||||||    
T  41451593 ctgttgatgctcatacaggatctcacctttttaa 41451560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 14 - 347
Target Start/End: Complemental strand, 41438724 - 41438391
Alignment:
Q  14 agatatcaggcgttgttaaggtttgtggagaaaaggcctacgttgctcaatcaccatggattcaaagtggcaagatagaggataatatattgtttggcaa 113  Q
    |||||||||||||  |||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||  |    
T  41438724 agatatcaggcgtccttaaggtttgtggaaaaaaggcctatgttgctcaattaccatggattcaaagtggcaagatagaggataatatattatttggtga 41438625  T
Q  114 acaaatggttagggaaaggtatgaaaaggtactcgaagcatgctccttacagaaggatctggaaatcttgtcatttggtgatcaaacagttataggcgag 213  Q
    | | ||||||||||||||||||||||||||||| ||||||||  ||||  |||||||| | ||||||||||||||||||||||| |||||||||||||||    
T  41438624 aaacatggttagggaaaggtatgaaaaggtacttgaagcatgtaccttgaagaaggatttagaaatcttgtcatttggtgatcagacagttataggcgag 41438525  T
Q  214 cgcggaataaatttgagtggtggacagaaacaaagaatacaaattgcgcgcgctctttaccaagatgctgatatttatctatttgatgatccttttagtg 313  Q
    || ||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  41438524 cgtggaataaatttgagtggtggacagaaacaaagaatacaaatagctcgtgctctttaccaagatgctgatatctatctatttgatgatccttttagtg 41438425  T
Q  314 ctgtggatgctcatacaggatctcacctttttaa 347  Q
    |||||||||||||||| |||||||||||||||||    
T  41438424 ctgtggatgctcatacgggatctcacctttttaa 41438391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 14 - 347
Target Start/End: Original strand, 14372474 - 14372807
Alignment:
Q  14 agatatcaggcgttgttaaggtttgtggagaaaaggcctacgttgctcaatcaccatggattcaaagtggcaagatagaggataatatattgtttggcaa 113  Q
    ||||||||||| |  |||| |||||||||  ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |    
T  14372474 agatatcaggcatccttaaagtttgtggaacaaaggcctatgttgctcaatcaccatggattcaaagtggcacgatagaggataatatattgtttggtga 14372573  T
Q  114 acaaatggttagggaaaggtatgaaaaggtactcgaagcatgctccttacagaaggatctggaaatcttgtcatttggtgatcaaacagttataggcgag 213  Q
    ||| ||||||| |||||||||||| | |||||| |||||||| ||| |  |||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  14372574 acacatggttaaggaaaggtatgagatggtacttgaagcatgttccctgaagaaggatctggaaatattgtcatttggtgatcagacagttataggcgag 14372673  T
Q  214 cgcggaataaatttgagtggtggacagaaacaaagaatacaaattgcgcgcgctctttaccaagatgctgatatttatctatttgatgatccttttagtg 313  Q
    || ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  14372674 cgtggaataaatttgagtggtggacagaaacagagaatacaaattgctcgcgctctttaccaagatgctgatatatatctatttgatgatccttttagtg 14372773  T
Q  314 ctgtggatgctcatacaggatctcacctttttaa 347  Q
    | ||||||||||||||||||||||||||||||||    
T  14372774 ccgtggatgctcatacaggatctcacctttttaa 14372807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 109; Significance: 9e-55; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 67 - 347
Target Start/End: Complemental strand, 22750548 - 22750268
Alignment:
Q  67 ccatggattcaaagtggcaagatagaggataatatattgtttggcaaacaaatggttagggaaaggtatgaaaaggtactcgaagcatgctccttacaga 166  Q
    |||||||| |||||| ||||||||||  |||| ||||||||||| ||  | ||||  ||| |||| ||||| ||||| || |||||||| ||  || |||    
T  22750548 ccatggatacaaagtagcaagatagaaaataacatattgtttgggaaggatatggaaaggcaaagatatgagaaggttcttgaagcatgttcactaaaga 22750449  T
Q  167 aggatctggaaatcttgtcatttggtgatcaaacagttataggcgagcgcggaataaatttgagtggtggacagaaacaaagaatacaaattgcgcgcgc 266  Q
    ||||||| || || || |||||||| ||||||||| ||||||| ||| | |||||||||||||| || ||||||||||||||| |||||||||| || ||    
T  22750448 aggatctcgagattttatcatttggcgatcaaacaattataggggagaggggaataaatttgagcggcggacagaaacaaagagtacaaattgctcgtgc 22750349  T
Q  267 tctttaccaagatgctgatatttatctatttgatgatccttttagtgctgtggatgctcatacaggatctcacctttttaa 347  Q
    | | || |||||||||||||| ||||||||||||||||| ||||||||| | |||||||||||||||||||| || |||||    
T  22750348 tttatatcaagatgctgatatatatctatttgatgatccgtttagtgctcttgatgctcatacaggatctcatctatttaa 22750268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 31 - 335
Target Start/End: Complemental strand, 22727265 - 22726961
Alignment:
Q  31 aaggtttgtggagaaaaggcctacgttgctcaatcaccatggattcaaagtggcaagatagaggataatatattgtttggcaaacaaatggttagggaaa 130  Q
    ||||||||||||  |||||| || |||||||||||||| ||||| || |||||||||||||| ||||||||| | ||||| | | | |||| ||||||||    
T  22727265 aaggtttgtggaacaaaggcttatgttgctcaatcaccgtggatacagagtggcaagatagaagataatatactatttggtagagagatggatagggaaa 22727166  T
Q  131 ggtatgaaaaggtactcgaagcatgctccttacagaaggatctggaaatcttgtcatttggtgatcaaacagttataggcgagcgcggaataaatttgag 230  Q
     |||| | ||||| || |||||||| || ||  |||| || || ||  | ||  ||||||||||||| ||  |||| || |||   ||||| ||||||||    
T  22727165 agtattagaaggttctagaagcatgttcattgaagaaagacctcgaggttttaccatttggtgatcagaccattattggagagaagggaatcaatttgag 22727066  T
Q  231 tggtggacagaaacaaagaatacaaattgcgcgcgctctttaccaagatgctgatatttatctatttgatgatccttttagtgctgtggatgctcataca 330  Q
    |||||||||||| |||||| ||||||| || || ||||||||||||||||||||||| |||||  | || ||||| |||||||| || ||||||||||||    
T  22727065 tggtggacagaagcaaagagtacaaatcgctcgtgctctttaccaagatgctgatatatatctgctcgacgatccctttagtgcagttgatgctcataca 22726966  T
Q  331 ggatc 335  Q
    |||||    
T  22726965 ggatc 22726961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 45 - 335
Target Start/End: Original strand, 22739732 - 22740022
Alignment:
Q  45 aaaggcctacgttgctcaatcaccatggattcaaagtggcaagatagaggataatatattgtttggcaaacaaatggttagggaaaggtatgaaaaggta 144  Q
    |||||| || ||||||||||| |||||||| || |||||||||||||| || |||||| | ||||| | | | |||| || ||||| |||||| |||||     
T  22739732 aaaggcttatgttgctcaatcgccatggatacagagtggcaagatagaagagaatatactatttggtagagagatggataaggaaaagtatgagaaggtt 22739831  T
Q  145 ctcgaagcatgctccttacagaaggatctggaaatcttgtcatttggtgatcaaacagttataggcgagcgcggaataaatttgagtggtggacagaaac 244  Q
    || |||||||| || ||  |||| || || ||  | ||  ||||| ||||||||||  |||| || |||   ||||| ||||||||||||||||||||||    
T  22739832 ctagaagcatgttcattgaagaaagacctcgaggttttaccatttcgtgatcaaaccattattggagagaaaggaatcaatttgagtggtggacagaaac 22739931  T
Q  245 aaagaatacaaattgcgcgcgctctttaccaagatgctgatatttatctatttgatgatccttttagtgctgtggatgctcatacaggatc 335  Q
    ||||| |||||||||| || |||||||||||| ||||||||||||||||  | || ||||| |||||||| || |||||||||||||||||    
T  22739932 aaagagtacaaattgctcgtgctctttaccaaaatgctgatatttatctgctcgacgatccctttagtgcagttgatgctcatacaggatc 22740022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 217 - 335
Target Start/End: Original strand, 22740747 - 22740865
Alignment:
Q  217 ggaataaatttgagtggtggacagaaacaaagaatacaaattgcgcgcgctctttaccaagatgctgatatttatctatttgatgatccttttagtgctg 316  Q
    ||||| |||||||||||||||||||| |||||| ||||||| || || ||||||||||||||||||||||| |||||  | |||||||| |||||||| |    
T  22740747 ggaatcaatttgagtggtggacagaagcaaagactacaaatcgctcgtgctctttaccaagatgctgatatatatctgctcgatgatccctttagtgcag 22740846  T
Q  317 tggatgctcatacaggatc 335  Q
    | |||||||||||||||||    
T  22740847 ttgatgctcatacaggatc 22740865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 227 - 347
Target Start/End: Original strand, 2301225 - 2301345
Alignment:
Q  227 tgagtggtggacagaaacaaagaatacaaattgcgcgcgctctttaccaagatgctgatatttatctatttgatgatccttttagtgctgtggatgctca 326  Q
    |||||||||||||||||||||||||||| || ||  | ||| |||| ||||||||||| || || || ||||||||||||||||||||||| ||||||||    
T  2301225 tgagtggtggacagaaacaaagaatacagatagctagagctgtttatcaagatgctgacatatacctttttgatgatccttttagtgctgtcgatgctca 2301324  T
Q  327 tacaggatctcacctttttaa 347  Q
    ||| ||  ||||||| |||||    
T  2301325 tactggcactcacctctttaa 2301345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 227 - 347
Target Start/End: Original strand, 2325444 - 2325564
Alignment:
Q  227 tgagtggtggacagaaacaaagaatacaaattgcgcgcgctctttaccaagatgctgatatttatctatttgatgatccttttagtgctgtggatgctca 326  Q
    |||||||||||||||||||||||||||| || ||  | ||| |||| ||||||||||| || || || ||||||||||||||||||||||| ||||||||    
T  2325444 tgagtggtggacagaaacaaagaatacagatagctagagctgtttatcaagatgctgacatatacctttttgatgatccttttagtgctgtcgatgctca 2325543  T
Q  327 tacaggatctcacctttttaa 347  Q
    ||| ||  ||||||| |||||    
T  2325544 taccggcactcacctctttaa 2325564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 277 - 331
Target Start/End: Complemental strand, 5282709 - 5282655
Alignment:
Q  277 gatgctgatatttatctatttgatgatccttttagtgctgtggatgctcatacag 331  Q
    |||||||||||||||||  ||||||||||||||||||| || |||||||||||||    
T  5282709 gatgctgatatttatctccttgatgatccttttagtgcagttgatgctcatacag 5282655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 331
Target Start/End: Complemental strand, 5290296 - 5290242
Alignment:
Q  277 gatgctgatatttatctatttgatgatccttttagtgctgtggatgctcatacag 331  Q
    ||||||||||| |||||  ||||||||||||| ||||| || |||||||||||||    
T  5290296 gatgctgatatctatctccttgatgatcctttcagtgcagttgatgctcatacag 5290242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 331
Target Start/End: Complemental strand, 14949459 - 14949405
Alignment:
Q  277 gatgctgatatttatctatttgatgatccttttagtgctgtggatgctcatacag 331  Q
    ||||||||||| |||||  ||||||||||||| ||||| || |||||||||||||    
T  14949459 gatgctgatatctatcttcttgatgatcctttcagtgcagttgatgctcatacag 14949405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 331
Target Start/End: Original strand, 15125916 - 15125970
Alignment:
Q  277 gatgctgatatttatctatttgatgatccttttagtgctgtggatgctcatacag 331  Q
    ||||||||||| |||||  ||||||||||||| ||||| || |||||||||||||    
T  15125916 gatgctgatatctatcttcttgatgatcctttcagtgcagttgatgctcatacag 15125970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0196 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 278 - 329
Target Start/End: Original strand, 13502 - 13553
Alignment:
Q  278 atgctgatatttatctatttgatgatccttttagtgctgtggatgctcatac 329  Q
    |||||||||| |||||||| |||||||| ||||||||||| |||||||||||    
T  13502 atgctgatatatatctattggatgatccatttagtgctgttgatgctcatac 13553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 329
Target Start/End: Complemental strand, 11673067 - 11672961
Alignment:
Q  223 aatttgagtggtggacagaaacaaagaatacaaattgcgcgcgctctttaccaagatgctgatatttatctatttgatgatccttttagtgctgtggatg 322  Q
    ||||| ||||| || || |||||| |||| ||| |||| || ||||| || ||| |||||||| | |||||||| |||||||| ||||||||||| ||||    
T  11673067 aatttaagtggaggtcaaaaacaacgaattcaacttgctcgtgctctctatcaaaatgctgatttatatctattggatgatccatttagtgctgttgatg 11672968  T
Q  323 ctcatac 329  Q
    | |||||    
T  11672967 cgcatac 11672961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 329
Target Start/End: Original strand, 11663919 - 11663983
Alignment:
Q  265 gctctttaccaagatgctgatatttatctatttgatgatccttttagtgctgtggatgctcatac 329  Q
    |||||||| ||  |||||||||| ||||| || |||||||| ||||||||||| ||||| |||||    
T  11663919 gctctttatcagaatgctgatatatatctcttggatgatccatttagtgctgttgatgcacatac 11663983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 323
Target Start/End: Original strand, 11756738 - 11756814
Alignment:
Q  247 agaatacaaattgcgcgcgctctttaccaagatgctgatatttatctatttgatgatccttttagtgctgtggatgc 323  Q
    ||||| ||| |||| || |||||||| ||| |||||||| | ||||| || ||||||||||| |||||||| |||||    
T  11756738 agaattcaacttgctcgagctctttatcaaaatgctgatgtatatctcttggatgatcctttcagtgctgttgatgc 11756814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 248 - 329
Target Start/End: Complemental strand, 8028 - 7947
Alignment:
Q  248 gaatacaaattgcgcgcgctctttaccaagatgctgatatttatctatttgatgatccttttagtgctgtggatgctcatac 329  Q
    |||| ||| |||| || |||||||| ||  |||||||||| |||||||| |||||||| ||||||||||| ||||| |||||    
T  8028 gaattcaacttgctcgtgctctttatcagaatgctgatatatatctattagatgatccatttagtgctgttgatgcgcatac 7947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University