View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13984_high_22 (Length: 356)

Name: NF13984_high_22

Description: NF13984

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF13984_high_22

[»] chr5 (1 HSPs)

[»] chr3 (1 HSPs)

Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 1)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 244; E-Value: 1e-135

Query Start/End: Original strand, 84 - 338

Target Start/End: Original strand, 40225566 - 40225821

Alignment:

Q	84	catgtatgatttggttgtcacacaaatgtaaaggtaa-caaaacagctatgagaaatttaagaagctataaaatgtgctttattttgtggccatagttgt	182	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	40225566	catgtatgatttggttgtcacacaaatgtaaaggtaaacaaaacagctatgagaaatttaagaagctataaaatgtgctttattttgtggccgtagttgt	40225665	T

Q	183	actatacaattttcatactggaattggttgattttagattttcaggcaagaagacattgtgcaagatgtgcattttcttaccaaaaaggtgatcttctaa	282	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	40225666	actatacaattttcatactggaattggttgattttagattttcaggcaagaagacattgtgcaagatgtgcattttcttaccaaaaaggtgatcttctaa	40225765	T

Q	283	cgaaccattcgccatatattcatataccaaaatcctttgatcaccttctgcacaat	338	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	40225766	cgaaccattcgccatatattcatataccaaaatcctttgatcaccttctgcacaat	40225821	T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 32; E-Value: 0.000000008

Query Start/End: Original strand, 275 - 338

Target Start/End: Original strand, 19994671 - 19994734

Alignment:

Q	275	tcttctaacgaaccattcgccatatattcatataccaaaatcctttgatcaccttctgcacaat	338	Q
		\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	19994671	tcttctaagcaaccattggccatgtattcataaaccaaaaccctctgatcaccttcagcacaat	19994734	T

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