View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13984_high_29 (Length: 303)
Name: NF13984_high_29
Description: NF13984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13984_high_29 |
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Alignment Details
Target: chr1 (Bit Score: 124; Significance: 8e-64; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 6 - 190
Target Start/End: Original strand, 33382044 - 33382223
Alignment:
| Q |
6 |
aggatctcctgtcaccgacgacttacgctttgacagggttagggtttgggttgataaagaaggaattgtcactcaggttccaacaattggatagaaagtg |
105 |
Q |
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| T |
33382044 |
aggatcttctgtcaccgacgacttacgctttgacagggttagggtttgggttgataaagaaggaattgtgactcaggttccaacaattggataaaaagtg |
33382143 |
T |
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| Q |
106 |
tcatggaattgaacctgtccatatgctccaagttattataaacttaatgattcaataaggagctatagtttgtttccaattgtat |
190 |
Q |
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| T |
33382144 |
tcatggaattgaacttgtatatatgctccaag---ttataaatttaatgcttcaataaggagctat--tttctttccaattgtat |
33382223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 40 - 119
Target Start/End: Original strand, 33400338 - 33400417
Alignment:
| Q |
40 |
agggttagggtttgggttgataaagaaggaattgtcactcaggttccaacaattggatagaaagtgtcatggaattgaac |
119 |
Q |
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| T |
33400338 |
agggtttgggtttgggttgacaaagatggaattgtctttaaggttccaacaattggatagaaagtgtcatggaattgaac |
33400417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 25 - 190
Target Start/End: Original strand, 33356563 - 33356737
Alignment:
| Q |
25 |
gacttacgctttgacagggttagggtttgggttgataaagaaggaattgtcactcaggttccaacaattggatagaaagtg------------tcatgga |
112 |
Q |
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| T |
33356563 |
gacttccgctgtgacagggtttgggtttggattaataaagatgaaattgtctaccaggttccaacaattggatagaaagtgtctctatactcatcatgga |
33356662 |
T |
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| Q |
113 |
attgaacctgtccatatgctccaagttattataaacttaatgattcaataaggagctatagtttgtttccaattgtat |
190 |
Q |
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| T |
33356663 |
atttaacttgtatacatgctccaag---ttataaatttaatgtttcaataaggagctatagtttctttccaattgtat |
33356737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 262 - 303
Target Start/End: Original strand, 33356820 - 33356861
Alignment:
| Q |
262 |
gaaatatatatgacattgtactaatattgtccaataatatat |
303 |
Q |
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| T |
33356820 |
gaaatatatatgacattgtactaatattgtccaataatatat |
33356861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 6 - 189
Target Start/End: Complemental strand, 39307017 - 39306839
Alignment:
| Q |
6 |
aggatctcctgtcaccgacgacttacgctttgacagggttagggtttgggttgataaagaaggaattgtcactcaggttccaacaattggatagaaagtg |
105 |
Q |
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| T |
39307017 |
aggatcttttgtcaccgccgacttccgctgtgacagggttagggtttgggttgataaagatggaattgtctatcaggttccgataattggatagaaagtg |
39306918 |
T |
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| Q |
106 |
tcatggaattgaacctgtccatatgctccaagttattataaacttaatgattcaataaggagctatagtttgtttccaattgta |
189 |
Q |
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| T |
39306917 |
tcatggaattgaacttgaatatatgctccaag---ttataaatttaaggtttcaataaggagc--tggtttatttccaattgta |
39306839 |
T |
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