View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13984_high_32 (Length: 268)
Name: NF13984_high_32
Description: NF13984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13984_high_32 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 36704396 - 36704662
Alignment:
| Q |
1 |
ctataaaatcagcatgtgcataatcatccttgaacaataccacgcgcttgttagcatcttgatcactgagatcattgagcaaaaccttcacatcttgtac |
100 |
Q |
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| T |
36704396 |
ctataaaatcagcatgtgcataatcatccttgaacaataccacgcgcttgttagcatcttgatcactgagatcattgagcaaaaccttcacatcttgtac |
36704495 |
T |
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| Q |
101 |
atcagatnnnnnnntccttccctccatagccaagaaaaagtgggaattcacttgagatttttgtcatgtcatatgttggaggaaccctttgtccatagtg |
200 |
Q |
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| T |
36704496 |
atcagataaaaaa-tcattccctccatagccaagaaaaagtgggaattcacttgagatttttgtcatgtcatatgttggaggaaccctttgtccatagtg |
36704594 |
T |
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| Q |
201 |
ttgtatattttgtgctgcattaacataatcatactttgctatttttcctgttctgatcactactcaaa |
268 |
Q |
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| T |
36704595 |
ttgtatattttgtgctgcattaacataatcatactttgctatttttcctgttctgatcactactcaaa |
36704662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 2 - 268
Target Start/End: Original strand, 36711544 - 36711812
Alignment:
| Q |
2 |
tataaaatcagcatgtgcataatcatccttgaacaataccacgcgcttgttagcatcttgatcact---gagatcattgagcaaaaccttcacatcttgt |
98 |
Q |
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| T |
36711544 |
tataaaatcaagatgtgcataatcatccttaaacaataccacacggttgctagcatcatggtcattattgagttcattgaacaaaaccttcacatcttgt |
36711643 |
T |
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| Q |
99 |
acatcagatnnnnnnntccttccctccatagccaagaaaaagtgggaattcacttgagatttttgtcatgtcatatgttggaggaaccctttgtccatag |
198 |
Q |
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| T |
36711644 |
acatcagatagagta-tctttccctccatagctgagaaaaagggggaattcactagggattttggtcacgtcataagttggaggaaccctttgtccatag |
36711742 |
T |
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| Q |
199 |
tgttgtatattttgtgctgcattaacataatcatactttgctatttttcctgttctgatcactactcaaa |
268 |
Q |
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| T |
36711743 |
tgttgtaaattttgtgcttcatcaacataatcatactttgatatttgtccttttctgatcactactcaaa |
36711812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 268
Target Start/End: Complemental strand, 36664740 - 36664628
Alignment:
| Q |
156 |
gatttttgtcatgtcatatgttggaggaaccctttgtccatagtgttgtatattttgtgctgcattaacataatcatactttgctatttttcctgttctg |
255 |
Q |
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| T |
36664740 |
gattttggtcaagtcataagttggaggagttcgatgtccatagtgtagtagattttgtgcttgatgaacataatcatactttgtgatttttcctgttctc |
36664641 |
T |
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| Q |
256 |
atcactactcaaa |
268 |
Q |
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| T |
36664640 |
gtcactattcaaa |
36664628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 36677440 - 36677489
Alignment:
| Q |
190 |
tgtccatagtgttgtatattttgtgctgcattaacataatcatactttgc |
239 |
Q |
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| T |
36677440 |
tgtccatagtgtagtagattttgtgcttgatgaacataatcatactttgc |
36677489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 36687522 - 36687571
Alignment:
| Q |
190 |
tgtccatagtgttgtatattttgtgctgcattaacataatcatactttgc |
239 |
Q |
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| T |
36687522 |
tgtccatagtgtagtagattttgtgcttgatgaacataatcatactttgc |
36687571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 5 - 266
Target Start/End: Complemental strand, 30905765 - 30905505
Alignment:
| Q |
5 |
aaaatcagcatgtgcataatcatccttgaacaataccacgcgcttgttagcatcttgatcactgagatcattgagcaaaaccttcacatcttgtacatca |
104 |
Q |
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| T |
30905765 |
aaaatcagcatgtgcataatcttgattgaacgctgccacgagcttgttagcatcatgatcttggaggtcattgagcaaaaccttcacatcttgtacatca |
30905666 |
T |
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| Q |
105 |
gatnnnnnnntccttccctccatagccaagaaaaagtgggaattcacttgagatttttgtcatgtcatatgttggaggaaccctttgtccatagtgttgt |
204 |
Q |
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| T |
30905665 |
gatagcata-tcttgccctccatatccgagaaaaagtgggaaatcattcgggattttggtcaggtcgtaagttggaggaactcgttgaccatagtgttgt |
30905567 |
T |
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| Q |
205 |
atattttgtgctgcattaacataatcatactttgctatttttcctgttctgatcactactca |
266 |
Q |
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| T |
30905566 |
acattttgtgcttgatcaacataatcatactttgctatttttcctgttctgatcactactca |
30905505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 263
Target Start/End: Complemental strand, 11300745 - 11300706
Alignment:
| Q |
224 |
cataatcatactttgctatttttcctgttctgatcactac |
263 |
Q |
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| T |
11300745 |
cataatcatactttgctattgttccttttctgatcactac |
11300706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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