View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13984_high_35 (Length: 254)
Name: NF13984_high_35
Description: NF13984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13984_high_35 |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 11 - 233
Target Start/End: Complemental strand, 31496126 - 31495904
Alignment:
| Q |
11 |
aagcaaaggcaacacaagaaatcatgctcaataggtctggtttttcgttcgaagctttatcggagacaaaagagtacaaagatgtgagcaacaaaacaag |
110 |
Q |
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| T |
31496126 |
aagcaaaggcaacacaagaaatcatgctcaataggtctggtttttcgttcgaagctttatcggagacaaaagagtacaaagatgtgagcaacaaaacaag |
31496027 |
T |
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| Q |
111 |
aacacccaaatgagctctcagcaagaatctctttgaaagtttccattttttcaaaaataacatcatgctactgatactgaaacttaccactgtgtaaata |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31496026 |
aacacccaaatgagctctcagcaagaatctctttgaaagtttccattttttcaaaaataacatcatgctactgatactgaaacttaccactgtgtaaata |
31495927 |
T |
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| Q |
211 |
atgattttgatgaagttccactt |
233 |
Q |
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||||||||||||||||||||||| |
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| T |
31495926 |
atgattttgatgaagttccactt |
31495904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 65 - 233
Target Start/End: Complemental strand, 40844535 - 40844367
Alignment:
| Q |
65 |
ctttatcggagacaaaagagtacaaagatgtgagcaacaaaacaagaacacccaaatgagctctcagcaagaatctctttgaaagtttccattttttcaa |
164 |
Q |
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||||||| || ||||||||||| |||||||| |||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||| ||||| |
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| T |
40844535 |
ctttatcagatacaaaagagtataaagatgttagcaacaaaacaagaacacccaaatgagctttcagtaagaatctccttgaaagtttccatttcttcaa |
40844436 |
T |
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| Q |
165 |
aaataacatcatgctactgatactgaaacttaccactgtgtaaataatgattttgatgaagttccactt |
233 |
Q |
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| T |
40844435 |
aaataacatcatgctactaatactgaaacttaccaatgtgtaaataatgattttgatgaagttccactt |
40844367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 133 - 233
Target Start/End: Complemental strand, 31461456 - 31461357
Alignment:
| Q |
133 |
aagaatctctttgaaagtttccatttt-ttcaaaaataacatcatgctactgatactgaaacttaccactgtgtaaataatgattttgatgaagttccac |
231 |
Q |
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||||||||| |||||||||||| |||| ||||||| ||||||||||| |||||||||||||||||||| ||||||||||| | ||| |||||||||||| |
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| T |
31461456 |
aagaatctccttgaaagtttcccttttattcaaaagtaacatcatgcgactgatactgaaacttacca--gtgtaaataatcaattttatgaagttccac |
31461359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 133 - 233
Target Start/End: Complemental strand, 31388785 - 31388686
Alignment:
| Q |
133 |
aagaatctctttgaaagtttccatttt-ttcaaaaataacatcatgctactgatactgaaacttaccactgtgtaaataatgattttgatgaagttccac |
231 |
Q |
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||||| ||| |||||| ||||| |||| ||||||| ||||||||||| |||||||||||||||||||| ||||||||||| | ||| |||||||||||| |
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| T |
31388785 |
aagaaactccttgaaactttcccttttattcaaaagtaacatcatgcgactgatactgaaacttacca--gtgtaaataatcaattttatgaagttccac |
31388688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 114
Target Start/End: Original strand, 140185 - 140272
Alignment:
| Q |
27 |
agaaatcatgctcaataggtctggt-ttttcgttcgaagctttatcggagacaaaagagtacaaagatgtgagcaacaaaacaagaaca |
114 |
Q |
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|||||||| ||||| ||||||||| |||| |||| ||||||||| || |||||||||||||| ||||| |||||||||||||||||| |
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| T |
140185 |
agaaatcagactcaagaggtctggtgttttagttcaaagctttattagatacaaaagagtacaa-gatgttagcaacaaaacaagaaca |
140272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 114
Target Start/End: Original strand, 148206 - 148293
Alignment:
| Q |
27 |
agaaatcatgctcaataggtctggt-ttttcgttcgaagctttatcggagacaaaagagtacaaagatgtgagcaacaaaacaagaaca |
114 |
Q |
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|||||||| ||||| ||||||||| |||| |||| ||||||||| || |||||||||||||| ||||| |||||||||||||||||| |
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| T |
148206 |
agaaatcagactcaagaggtctggtgttttagttcaaagctttattagatacaaaagagtacaa-gatgttagcaacaaaacaagaaca |
148293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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