View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13984_high_40 (Length: 227)
Name: NF13984_high_40
Description: NF13984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13984_high_40 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 46979887 - 46980107
Alignment:
| Q |
7 |
cttgttaccctgtgcaaccttgttaacaattcagtgttgttgtgcattgctgatcaaggacaattaacagctgatgaatctgttgtggaaggtgaagaaa |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46979887 |
cttgttaccctgtgcaaccttgttaacaattcagtgttgttgtgcattgctgatcaaggacaattaacagctgatgaatctgttgtggaaggtgaagaaa |
46979986 |
T |
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| Q |
107 |
tcgatggtctgagtagactatgcatgctactgtttgcaattatgatttccagtgtttaaccatattcccctagataacaggttgtgataaaatgttgaag |
206 |
Q |
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| T |
46979987 |
tcgatggtctgagtagactatgcatgctactgtttgcaattatgatttccagtgtttaaccatattcccctagataacaagttgtgataaaatgttgaag |
46980086 |
T |
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| Q |
207 |
tatgactctcatggttaaatt |
227 |
Q |
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||||||||||||||||||||| |
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| T |
46980087 |
tatgactctcatggttaaatt |
46980107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 7 - 149
Target Start/End: Original strand, 34322835 - 34322977
Alignment:
| Q |
7 |
cttgttaccctgtgcaaccttgttaacaattcagtgttgttgtgcattgctgatcaaggacaattaacagctgatgaatctgttgtggaaggtgaagaaa |
106 |
Q |
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||||| ||||| ||||||||||| |||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34322835 |
cttgtcaccctatgcaaccttgtgaacaattcagtgttattgtgcattactgatcttggacaattaacagctgatgaatctgttgtggaaggtgaagaaa |
34322934 |
T |
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| Q |
107 |
tcgatggtctgagtagactatgcatgctactgtttgcaattat |
149 |
Q |
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| T |
34322935 |
ttgatggtctgagtagattatgcatgccactgtttgcaattat |
34322977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 7 - 223
Target Start/End: Complemental strand, 2928545 - 2928326
Alignment:
| Q |
7 |
cttgttaccctgtgcaaccttgttaacaattcagtgttg-ttgtgcattgctgatcaaggacaattaacagctgatgaatctgttgtggaaggtgaagaa |
105 |
Q |
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||||||||||| ||||||||||| ||||||||| |||| ||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2928545 |
cttgttaccctatgcaaccttgtgaacaattcaatgtttattgtgcattactgatcatggacaattaacagctgatgaatatgttgtggaaggtgaagaa |
2928446 |
T |
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| Q |
106 |
atcgatggtctgagtagactatgcatgctactgtttgcaattatgatttccagtgtttaaccatattcccctagataacaggttgtgataaaatgttgaa |
205 |
Q |
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|| |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
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| T |
2928445 |
atttatggtctgagtatactatgcatgccactgtttgcaattatgatttccagtgtttaaccatattaccctagataacaagttgtgataaaatgttgaa |
2928346 |
T |
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| Q |
206 |
g--tatgactctcatggtta |
223 |
Q |
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| ||||||||||||||||| |
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| T |
2928345 |
gtatatgactctcatggtta |
2928326 |
T |
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