View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13984_high_5 (Length: 585)

Name: NF13984_high_5
Description: NF13984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13984_high_5
NF13984_high_5
[»] chr1 (8 HSPs)
chr1 (80-576)||(18298142-18298638)
chr1 (471-559)||(18294700-18294788)
chr1 (427-550)||(15112161-15112291)
chr1 (427-550)||(15125094-15125224)
chr1 (427-550)||(15141401-15141531)
chr1 (427-550)||(15149282-15149412)
chr1 (499-535)||(18294798-18294834)
chr1 (242-325)||(18295022-18295105)
[»] chr5 (1 HSPs)
chr5 (479-550)||(18614251-18614325)


Alignment Details
Target: chr1 (Bit Score: 461; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 80 - 576
Target Start/End: Complemental strand, 18298638 - 18298142
Alignment:
Q  80 gcatggaggacttgaaatagagcttacaggagcaaaaggatacgctgtatcccaagcatatgaaaatgcatctgtattattataagccaaaacatgacca 179  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  18298638 gcatggaggacttgaaatagagcttacaggagcaaaaggatatgctgtatcccaagcatatgaaaatgcatcagtattattataagccaaaacatgacca 18298539  T
Q  180 ttatataagaggcaagtatctccttgaatctttagaattaaagggtcgatatttagtgcagtttgaaaccctttacaagataacaatatttggctttgta 279  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  18298538 ttatataagaggcaagtatctccttgaatcttaagaattaaagggtcgatacttagtgcagtttgaaaccctttacaagataataatatttggctttgta 18298439  T
Q  280 cacaattgcaattgttggtaattgacactctccattgaggcttgccttgaattggtggcccaaattttgtttgggcaatttgaagggtgttcaatggaca 379  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18298438 cacaattgcaattgttggtaatcgacactctccattgaggcttgccttgaattggtggcccaaattttgtttgggcaatttgaagggtgttcaatggaca 18298339  T
Q  380 attataacatgttcctgaaaaatatttgggtaagaaactaaattgttaaagagatcatagttgaaagcatatgcacttgtagaaataataaataagagca 479  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  18298338 attataacatgttcctgaaaaatatttgggtaagacactaaattgttaaagagatcatagttgaaagcatatgcacttgaagaaataataaataagagca 18298239  T
Q  480 tacctttgatgacaagtgtaaggaagattattgaaataagatacttgaatgtggtttccatggttctttgttgcttactcatgtgcctttgcttctc 576  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  18298238 tacctttgatgacaagtgtaaggaagattattgaaataagatacttgaatgtggtttccatggttctttgttgcttactcatgtgcctttggttctc 18298142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 471 - 559
Target Start/End: Complemental strand, 18294788 - 18294700
Alignment:
Q  471 ataagagcatacctttgatgacaagtgtaaggaagattattgaaataagatacttgaatgtggtttccatggttctttgttgcttactc 559  Q
    ||||||||||||||||||||||||  | |||||||||||  |||| ||||||||||||||||||| ||||  | |||||||||| ||||    
T  18294788 ataagagcatacctttgatgacaaaagcaaggaagattagggaaacaagatacttgaatgtggttgccattctcctttgttgctaactc 18294700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 427 - 550
Target Start/End: Original strand, 15112161 - 15112291
Alignment:
Q  427 aaagagatcatagttgaaagcatatgcacttgtagaaataataaataagagca----tacctttgatgacaag---tgtaaggaagattattgaaataag 519  Q
    ||||||||||||| | |||||||||||| ||| || |||| || ||||| | |    ||||||||||||||||   ||||||||||||||| | ||| ||    
T  15112161 aaagagatcatagataaaagcatatgcaattggaggaatattatataagtgaacatatacctttgatgacaagaattgtaaggaagattatggtaattag 15112260  T
Q  520 atacttgaatgtggtttccatggttctttgt 550  Q
    |||||| ||| || ||||||| |||||||||    
T  15112261 atacttcaatatgatttccattgttctttgt 15112291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 427 - 550
Target Start/End: Original strand, 15125094 - 15125224
Alignment:
Q  427 aaagagatcatagttgaaagcatatgcacttgtagaaataataaataagagca----tacctttgatgacaag---tgtaaggaagattattgaaataag 519  Q
    ||||||||||||| | |||||||||||| ||| || |||| || ||||| | |    ||||||||||||||||   ||||||||||||||| | ||| ||    
T  15125094 aaagagatcatagataaaagcatatgcaattggaggaatattatataagtgaacatatacctttgatgacaagaattgtaaggaagattatggtaattag 15125193  T
Q  520 atacttgaatgtggtttccatggttctttgt 550  Q
    |||||| ||| || ||||||| |||||||||    
T  15125194 atacttcaatatgatttccattgttctttgt 15125224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 427 - 550
Target Start/End: Original strand, 15141401 - 15141531
Alignment:
Q  427 aaagagatcatagttgaaagcatatgcacttgtagaaataataaataagagca----tacctttgatgacaag---tgtaaggaagattattgaaataag 519  Q
    ||||||||||||| | |||||||||||| ||| || |||| || ||||| | |    ||||||||||||||||   ||||||||||||||| | ||| ||    
T  15141401 aaagagatcatagataaaagcatatgcaattggaggaatattatataagtgaacatatacctttgatgacaagacttgtaaggaagattatggtaattag 15141500  T
Q  520 atacttgaatgtggtttccatggttctttgt 550  Q
    |||||| ||| |||||| ||| |||||||||    
T  15141501 atacttcaatatggttttcattgttctttgt 15141531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 427 - 550
Target Start/End: Original strand, 15149282 - 15149412
Alignment:
Q  427 aaagagatcatagttgaaagcatatgcacttgtagaaataataaataagagca----tacctttgatgacaag---tgtaaggaagattattgaaataag 519  Q
    ||||||||||||| | |||||||||||| ||| || |||| || ||||| | |    ||||||||||||||||   ||||||||||||||| | ||| ||    
T  15149282 aaagagatcatagataaaagcatatgcaattggaggaatattatataagtgaacatatacctttgatgacaagaattgtaaggaagattatggtaattag 15149381  T
Q  520 atacttgaatgtggtttccatggttctttgt 550  Q
    |||||| ||| || ||||||| |||||||||    
T  15149382 atacttcaatatgatttccattgttctttgt 15149412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 499 - 535
Target Start/End: Complemental strand, 18294834 - 18294798
Alignment:
Q  499 aaggaagattattgaaataagatacttgaatgtggtt 535  Q
    |||||||||||| ||||||||||||||||||||||||    
T  18294834 aaggaagattatggaaataagatacttgaatgtggtt 18294798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 325
Target Start/End: Complemental strand, 18295105 - 18295022
Alignment:
Q  242 ttgaaaccctttacaagataacaatatttggctttgtacacaattgcaattgttggtaattgacactctccattgaggcttgcc 325  Q
    ||||||||| |||||||| |||| ||||||||||||  ||||| ||||||||||| |||    ||| |||||| ||||||||||    
T  18295105 ttgaaacccgttacaagacaacattatttggctttgatcacaaatgcaattgttgataacctccaccctccatagaggcttgcc 18295022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 479 - 550
Target Start/End: Complemental strand, 18614325 - 18614251
Alignment:
Q  479 atacctttgatgacaag---tgtaaggaagattattgaaataagatacttgaatgtggtttccatggttctttgt 550  Q
    |||||||||||||||||   |||||| |||||||| | ||| |||||||||||| |||||||||| |||||||||    
T  18614325 atacctttgatgacaagacttgtaagcaagattatggtaattagatacttgaatatggtttccattgttctttgt 18614251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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