View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13984_high_7 (Length: 550)

Name: NF13984_high_7
Description: NF13984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13984_high_7
NF13984_high_7
[»] chr8 (11 HSPs)
chr8 (452-550)||(32266041-32266139)
chr8 (453-550)||(32567829-32567926)
chr8 (452-527)||(8481878-8481953)
chr8 (459-542)||(41665942-41666025)
chr8 (459-542)||(13395872-13395955)
chr8 (459-528)||(7923868-7923937)
chr8 (459-532)||(8299286-8299359)
chr8 (458-537)||(171586-171665)
chr8 (459-532)||(20496567-20496640)
chr8 (460-542)||(9922086-9922169)
chr8 (460-513)||(40265892-40265945)
[»] chr7 (8 HSPs)
chr7 (452-542)||(11277826-11277916)
chr7 (452-550)||(29967452-29967550)
chr7 (459-542)||(47876467-47876550)
chr7 (459-542)||(37919028-37919111)
chr7 (459-542)||(236012-236096)
chr7 (459-542)||(38890293-38890375)
chr7 (459-528)||(31177894-31177964)
chr7 (459-532)||(4938712-4938785)
[»] chr5 (13 HSPs)
chr5 (452-550)||(23237860-23237958)
chr5 (459-542)||(12824682-12824765)
chr5 (459-539)||(30732891-30732971)
chr5 (459-540)||(25824494-25824576)
chr5 (459-550)||(8227510-8227601)
chr5 (459-542)||(27117734-27117817)
chr5 (459-542)||(12820523-12820606)
chr5 (459-528)||(42513202-42513271)
chr5 (459-527)||(3418266-3418334)
chr5 (459-550)||(42927614-42927706)
chr5 (460-515)||(31641242-31641297)
chr5 (460-542)||(35984362-35984445)
chr5 (459-532)||(12032532-12032605)
[»] scaffold0511 (1 HSPs)
scaffold0511 (459-542)||(5985-6068)
[»] chr6 (6 HSPs)
chr6 (459-542)||(18789452-18789535)
chr6 (459-542)||(12733609-12733692)
chr6 (459-542)||(18651807-18651891)
chr6 (459-540)||(21167709-21167790)
chr6 (459-542)||(24767997-24768081)
chr6 (460-542)||(5734813-5734896)
[»] chr4 (15 HSPs)
chr4 (459-542)||(19754747-19754830)
chr4 (459-542)||(19784976-19785059)
chr4 (459-542)||(15739705-15739788)
chr4 (459-542)||(43019424-43019507)
chr4 (459-542)||(8890506-8890590)
chr4 (452-542)||(7403388-7403479)
chr4 (459-541)||(20788854-20788937)
chr4 (459-542)||(47686468-47686551)
chr4 (459-528)||(33845090-33845159)
chr4 (459-532)||(160275-160348)
chr4 (459-528)||(13271480-13271549)
chr4 (459-542)||(16427031-16427116)
chr4 (459-528)||(23643180-23643249)
chr4 (460-542)||(26184862-26184945)
chr4 (459-519)||(47418288-47418348)
[»] chr3 (11 HSPs)
chr3 (459-542)||(34333388-34333471)
chr3 (459-542)||(926604-926688)
chr3 (459-542)||(7312260-7312343)
chr3 (459-540)||(10312872-10312955)
chr3 (459-542)||(19920803-19920886)
chr3 (459-542)||(15827193-15827278)
chr3 (459-542)||(40931101-40931185)
chr3 (459-532)||(2363760-2363833)
chr3 (459-528)||(10324160-10324229)
chr3 (480-539)||(7031823-7031883)
chr3 (459-534)||(7239593-7239669)
[»] chr2 (2 HSPs)
chr2 (459-542)||(4551660-4551743)
chr2 (459-542)||(40914452-40914535)
[»] chr1 (10 HSPs)
chr1 (459-542)||(11909679-11909762)
chr1 (459-542)||(12813777-12813860)
chr1 (459-550)||(26059375-26059466)
chr1 (459-542)||(51051963-51052046)
chr1 (459-542)||(24547639-24547723)
chr1 (459-542)||(6259301-6259384)
chr1 (459-550)||(13351797-13351889)
chr1 (459-528)||(6050084-6050153)
chr1 (459-542)||(4841882-4841966)
chr1 (459-532)||(35540532-35540605)
[»] scaffold0369 (1 HSPs)
scaffold0369 (459-541)||(11779-11861)
[»] scaffold0034 (1 HSPs)
scaffold0034 (459-528)||(106432-106501)


Alignment Details
Target: chr8 (Bit Score: 87; Significance: 2e-41; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 452 - 550
Target Start/End: Original strand, 32266041 - 32266139
Alignment:
Q  452 aacaataaaaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgccaaacaatcacgaaaaagtcaaggtccaaactagattac 550  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  32266041 aacaataaaaaatgagatatattaactcggacaccgtaattgttaccgcacaagatgtgccaaacaatcacgaaaatgtcaaggtccaaacaagattac 32266139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 453 - 550
Target Start/End: Complemental strand, 32567926 - 32567829
Alignment:
Q  453 acaataaaaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgccaaacaatcacgaaaaagtcaaggtccaaactagattac 550  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||    
T  32567926 acaatcaaaaatgagatatattaactcggacaccgtaattgttaccgcacaagatgtgccaaacaatcacaaaaatgtcaaggtccaaacaagattac 32567829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 452 - 527
Target Start/End: Complemental strand, 8481953 - 8481878
Alignment:
Q  452 aacaataaaaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgccaaacaatcacgaaaa 527  Q
    |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8481953 aacaatcaaaaatgagatatattaactcggacaccgtaattgttaccgcacaagatgtgccaaacaatcacgaaaa 8481878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 459 - 542
Target Start/End: Complemental strand, 41666025 - 41665942
Alignment:
Q  459 aaaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgccaaacaatcacgaaaaagtcaaggtccaaac 542  Q
    |||||||||||||||| || |||| |||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||    
T  41666025 aaaaatgagatatattaacacggataccgtaattgttaccgcacaaggtgtgccaaacaatcacgaaaatgtcaagttccaaac 41665942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 459 - 542
Target Start/End: Original strand, 13395872 - 13395955
Alignment:
Q  459 aaaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgccaaacaatcacgaaaaagtcaaggtccaaac 542  Q
    |||||||||||||||| ||  |||||||||||||||||||| ||||| ||||||||||||||||||||| |||||| |||||||    
T  13395872 aaaaatgagatatattaacatggacaccgtaattgttaccgtacaaggtgtgccaaacaatcacgaaaatgtcaagttccaaac 13395955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 459 - 528
Target Start/End: Original strand, 7923868 - 7923937
Alignment:
Q  459 aaaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgccaaacaatcacgaaaaa 528  Q
    |||||||||||||||| |  ||||||||| |||||||||||||||||||||||| ||||||||| |||||    
T  7923868 aaaaatgagatatattaatacggacaccgcaattgttaccgcacaagatgtgcccaacaatcacaaaaaa 7923937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 459 - 532
Target Start/End: Original strand, 8299286 - 8299359
Alignment:
Q  459 aaaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgccaaacaatcacgaaaaagtca 532  Q
    |||||||||||||||| |  ||||||||| |||||||||||||||||||||||| ||||||||| |||| ||||    
T  8299286 aaaaatgagatatattaatacggacaccgcaattgttaccgcacaagatgtgcccaacaatcacaaaaatgtca 8299359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 458 - 537
Target Start/End: Original strand, 171586 - 171665
Alignment:
Q  458 aaaaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgccaaacaatcacgaaaaagtcaaggtc 537  Q
    ||||||||||||||||| |  ||||  ||||||||||||||| |||||||||||||||||||||| |||| |||| ||||    
T  171586 aaaaaatgagatatattaaaacggatcccgtaattgttaccgtacaagatgtgccaaacaatcacaaaaatgtcagggtc 171665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 459 - 532
Target Start/End: Original strand, 20496567 - 20496640
Alignment:
Q  459 aaaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgccaaacaatcacgaaaaagtca 532  Q
    |||||||||||||||| |  ||||||||| |||||||| ||||||||||||||| ||||||||| |||| ||||    
T  20496567 aaaaatgagatatattaatacggacaccgcaattgttatcgcacaagatgtgcccaacaatcacaaaaatgtca 20496640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 460 - 542
Target Start/End: Original strand, 9922086 - 9922169
Alignment:
Q  460 aaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgcc-aaacaatcacgaaaaagtcaaggtccaaac 542  Q
    ||||||||||||||| |  | |||||||||||| ||||||||||||||||||| |||||||||| |||  |||||| |||||||    
T  9922086 aaaatgagatatattaatactgacaccgtaattattaccgcacaagatgtgccaaaacaatcacaaaagtgtcaagttccaaac 9922169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 513
Target Start/End: Original strand, 40265892 - 40265945
Alignment:
Q  460 aaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgcca 513  Q
    ||||||| ||||||| |  | ||||||||||||||||||||||||| |||||||    
T  40265892 aaaatgaaatatattaatactgacaccgtaattgttaccgcacaaggtgtgcca 40265945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 5e-39; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 452 - 542
Target Start/End: Complemental strand, 11277916 - 11277826
Alignment:
Q  452 aacaataaaaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgccaaacaatcacgaaaaagtcaaggtccaaac 542  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  11277916 aacaataaaaaatgagatatattaactcggacaccgtaattgttaccgcacaagatgtgccaaacaatcacgaaaatgtcaaggtccaaac 11277826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 452 - 550
Target Start/End: Original strand, 29967452 - 29967550
Alignment:
Q  452 aacaataaaaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgccaaacaatcacgaaaaagtcaaggtccaaactagattac 550  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  29967452 aacaatcaaaaatgagatatattaactcggacaccgtaattgttaccgcacaagatgtgccaaacaatcatgaaaaagtcaaggtccaaacaagattac 29967550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 459 - 542
Target Start/End: Original strand, 47876467 - 47876550
Alignment:
Q  459 aaaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgccaaacaatcacgaaaaagtcaaggtccaaac 542  Q
    |||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  47876467 aaaaatgagatatattaacacggacaccgtaattgttaccgcacaaggtgtgccaaacaatcacgaaaatgtcaaggtccaaac 47876550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 459 - 542
Target Start/End: Original strand, 37919028 - 37919111
Alignment:
Q  459 aaaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgccaaacaatcacgaaaaagtcaaggtccaaac 542  Q
    |||||| ||||||||| || |||||||||||||||||| |||||||| ||||||||| ||||||||||| ||||||||||||||    
T  37919028 aaaaataagatatattaacacggacaccgtaattgttatcgcacaaggtgtgccaaataatcacgaaaatgtcaaggtccaaac 37919111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 459 - 542
Target Start/End: Complemental strand, 236096 - 236012
Alignment:
Q  459 aaaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgcc-aaacaatcacgaaaaagtcaaggtccaaac 542  Q
    |||||| ||||||||| ||  |||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||    
T  236096 aaaaataagatatattaacatggacaccgtaattgttaccgcacaaggtgtgccaaaacaatcacgaaaatgtcaaggtccaaac 236012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 459 - 542
Target Start/End: Complemental strand, 38890375 - 38890293
Alignment:
Q  459 aaaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgccaaacaatcacgaaaaagtcaaggtccaaac 542  Q
    |||||||||||||||| |   ||||||||||||||||||||||||||||||||||||||||||  |||| |||| |||||||||    
T  38890375 aaaaatgagatatattaatatggacaccgtaattgttaccgcacaagatgtgccaaacaatca-aaaaatgtcagggtccaaac 38890293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 459 - 528
Target Start/End: Complemental strand, 31177964 - 31177894
Alignment:
Q  459 aaaaatgagatatatttact-cggacaccgtaattgttaccgcacaagatgtgccaaacaatcacgaaaaa 528  Q
    |||||||||||||  ||| | ||||||||| |||||||||||||||||||||||| ||||||||| |||||    
T  31177964 aaaaatgagatattattaatacggacaccgcaattgttaccgcacaagatgtgcctaacaatcacaaaaaa 31177894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 459 - 532
Target Start/End: Complemental strand, 4938785 - 4938712
Alignment:
Q  459 aaaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgccaaacaatcacgaaaaagtca 532  Q
    |||||||||||||||| |  || |||||||||||||||||||||||| |||||| |||||| || |||| ||||    
T  4938785 aaaaatgagatatattaatacgaacaccgtaattgttaccgcacaaggtgtgcctaacaattacaaaaatgtca 4938712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 5e-39; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 452 - 550
Target Start/End: Original strand, 23237860 - 23237958
Alignment:
Q  452 aacaataaaaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgccaaacaatcacgaaaaagtcaaggtccaaactagattac 550  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  23237860 aacaataaaaaatgagatatattaactcggacaccgtaattgttaccgaacaagatgtgccaaacaatcacgaaaatgtcaaggtccaaacaagattac 23237958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 459 - 542
Target Start/End: Original strand, 12824682 - 12824765
Alignment:
Q  459 aaaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgccaaacaatcacgaaaaagtcaaggtccaaac 542  Q
    |||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  12824682 aaaaatgagatatattaatacggacaccgtaattgttaccgcacaagatgtgccaaacaatcacaaaaatgtcaaggtccaaac 12824765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 459 - 539
Target Start/End: Complemental strand, 30732971 - 30732891
Alignment:
Q  459 aaaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgccaaacaatcacgaaaaagtcaaggtcca 539  Q
    |||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||    
T  30732971 aaaaatgagatatattaatacggacaccgtaattgttaccgcacaagatgtgccaaacaatcacaaaaatgtcaaggtcca 30732891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 459 - 540
Target Start/End: Original strand, 25824494 - 25824576
Alignment:
Q  459 aaaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgcca-aacaatcacgaaaaagtcaaggtccaa 540  Q
    |||||||||||||||| || ||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||    
T  25824494 aaaaatgagatatattaacacggacaccgtaattgttaccgcacaaggtgtgccagaacaatcacgaaaatgtcaaggtccaa 25824576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 459 - 550
Target Start/End: Original strand, 8227510 - 8227601
Alignment:
Q  459 aaaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgccaaacaatcacgaaaaagtcaaggtccaaactagattac 550  Q
    |||||||||||||||| |  |||||||| |||||||||||||| |||||||| ||||||||||| |||| |||||||||||||| |||||||    
T  8227510 aaaaatgagatatattaatacggacaccataattgttaccgcataagatgtgtcaaacaatcacaaaaatgtcaaggtccaaacaagattac 8227601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 459 - 542
Target Start/End: Complemental strand, 27117817 - 27117734
Alignment:
Q  459 aaaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgccaaacaatcacgaaaaagtcaaggtccaaac 542  Q
    |||||||||||||||| |  ||||| |||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||    
T  27117817 aaaaatgagatatattaaaacggaccccgtaattgttaccgcacaagatgtgccaaacaatcacaaaaatgtcagggtccaaac 27117734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 459 - 542
Target Start/End: Complemental strand, 12820606 - 12820523
Alignment:
Q  459 aaaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgccaaacaatcacgaaaaagtcaaggtccaaac 542  Q
    |||||||||||||||| |  |||||| |||||||||||| | |||||||||||||||||||||| |||| ||||||||||||||    
T  12820606 aaaaatgagatatattaatacggacatcgtaattgttactgtacaagatgtgccaaacaatcacaaaaatgtcaaggtccaaac 12820523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 459 - 528
Target Start/End: Original strand, 42513202 - 42513271
Alignment:
Q  459 aaaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgccaaacaatcacgaaaaa 528  Q
    |||||||||||||||| |  ||||||||| |||||||||||||||||||||||| ||||||||| |||||    
T  42513202 aaaaatgagatatattaatacggacaccgcaattgttaccgcacaagatgtgcccaacaatcacaaaaaa 42513271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 459 - 527
Target Start/End: Original strand, 3418266 - 3418334
Alignment:
Q  459 aaaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgccaaacaatcacgaaaa 527  Q
    |||||||||||||||| |  ||||||||| |||||||| ||||||||||||||| ||||||||| ||||    
T  3418266 aaaaatgagatatattaatacggacaccgcaattgttatcgcacaagatgtgcccaacaatcacaaaaa 3418334  T

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Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 459 - 550
Target Start/End: Original strand, 42927614 - 42927706
Alignment:
Q  459 aaaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgcc-aaacaatcacgaaaaagtcaaggtccaaactagattac 550  Q
    |||||||||||||||| |  |||| |||||||||||||| ||| ||  |||||| ||||||||||||||| |||||  ||||||| |||||||    
T  42927614 aaaaatgagatatattaatacggataccgtaattgttacagcataaagtgtgccaaaacaatcacgaaaatgtcaaactccaaacaagattac 42927706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 460 - 515
Target Start/End: Original strand, 31641242 - 31641297
Alignment:
Q  460 aaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgccaaa 515  Q
    ||||||||||||||| |  | ||||||||||||||||||||||||| |||||||||    
T  31641242 aaaatgagatatattaatactgacaccgtaattgttaccgcacaaggtgtgccaaa 31641297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 460 - 542
Target Start/End: Complemental strand, 35984445 - 35984362
Alignment:
Q  460 aaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgcc-aaacaatcacgaaaaagtcaaggtccaaac 542  Q
    ||||||||||||||| |  | ||||||||||||||||| ||||||| |||||| |||||||||| |||  |||||| |||||||    
T  35984445 aaaatgagatatattaatactgacaccgtaattgttactgcacaaggtgtgccaaaacaatcacaaaagtgtcaagttccaaac 35984362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 459 - 532
Target Start/End: Complemental strand, 12032605 - 12032532
Alignment:
Q  459 aaaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgccaaacaatcacgaaaaagtca 532  Q
    |||||||||||||||| |  ||||||||  ||||||||||||| ||| |||||| |||||| || |||| ||||    
T  12032605 aaaaatgagatatattaatacggacaccacaattgttaccgcataaggtgtgcctaacaattacaaaaatgtca 12032532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0511 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 459 - 542
Target Start/End: Complemental strand, 6068 - 5985
Alignment:
Q  459 aaaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgccaaacaatcacgaaaaagtcaaggtccaaac 542  Q
    |||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  6068 aaaaatgagatatattaacacggacaccgtaattgttaccgcacaaggtgtgccaaacaatcacgaaaatgtcaaggtccaaac 5985  T

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Target: chr6 (Bit Score: 68; Significance: 4e-30; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 459 - 542
Target Start/End: Complemental strand, 18789535 - 18789452
Alignment:
Q  459 aaaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgccaaacaatcacgaaaaagtcaaggtccaaac 542  Q
    |||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  18789535 aaaaatgagatatattaacacggacaccgtaattgttaccgcacaaggtgtgccaaacaatcacgaaaatgtcaaggtccaaac 18789452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 459 - 542
Target Start/End: Original strand, 12733609 - 12733692
Alignment:
Q  459 aaaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgccaaacaatcacgaaaaagtcaaggtccaaac 542  Q
    |||||||||||||||| |  ||||||||||||||||||||||||||||| |||||||||||||| |||| |||| |||||||||    
T  12733609 aaaaatgagatatattaaaacggacaccgtaattgttaccgcacaagatatgccaaacaatcacaaaaatgtcagggtccaaac 12733692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 459 - 542
Target Start/End: Complemental strand, 18651891 - 18651807
Alignment:
Q  459 aaaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgcc-aaacaatcacgaaaaagtcaaggtccaaac 542  Q
    ||||||||||||||||  | ||||||||||||||||||| |||||||||||||| || ||||||||||||  |||||||||||||    
T  18651891 aaaaatgagatatattaccacggacaccgtaattgttacagcacaagatgtgccgaagcaatcacgaaaatttcaaggtccaaac 18651807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 459 - 540
Target Start/End: Original strand, 21167709 - 21167790
Alignment:
Q  459 aaaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgccaaacaatcacgaaaaagtcaaggtccaa 540  Q
    |||||||||||| ||| ||  ||||||||||||||||||||||||||||||| | |||||| || |||| ||||| ||||||    
T  21167709 aaaaatgagataaattaacaaggacaccgtaattgttaccgcacaagatgtgtcgaacaattacaaaaatgtcaaagtccaa 21167790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 459 - 542
Target Start/End: Complemental strand, 24768081 - 24767997
Alignment:
Q  459 aaaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgcc-aaacaatcacgaaaaagtcaaggtccaaac 542  Q
    |||||||||||||||| |  |||||||  |||||||||||||||||| |||||| ||||||||||  ||| ||||||||||||||    
T  24768081 aaaaatgagatatattaagacggacactataattgttaccgcacaaggtgtgccaaaacaatcacataaatgtcaaggtccaaac 24767997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 460 - 542
Target Start/End: Complemental strand, 5734896 - 5734813
Alignment:
Q  460 aaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgcc-aaacaatcacgaaaaagtcaaggtccaaac 542  Q
    ||||||||||||||| |  | ||||| ||||||||||||||||||| |||||| |||||||||| |||  |||||| |||||||    
T  5734896 aaaatgagatatattaatactgacactgtaattgttaccgcacaaggtgtgccaaaacaatcacaaaagtgtcaagttccaaac 5734813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 4e-30; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 459 - 542
Target Start/End: Original strand, 19754747 - 19754830
Alignment:
Q  459 aaaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgccaaacaatcacgaaaaagtcaaggtccaaac 542  Q
    |||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  19754747 aaaaatgagatatattaacacggacaccgtaattgttaccgcacaaggtgtgccaaacaatcacgaaaatgtcaaggtccaaac 19754830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 459 - 542
Target Start/End: Complemental strand, 19785059 - 19784976
Alignment:
Q  459 aaaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgccaaacaatcacgaaaaagtcaaggtccaaac 542  Q
    |||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  19785059 aaaaatgagatatattaacacggacaccgtaattgttaccgcacaaggtgtgccaaacaatcacgaaaatgtcaaggtccaaac 19784976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 459 - 542
Target Start/End: Original strand, 15739705 - 15739788
Alignment:
Q  459 aaaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgccaaacaatcacgaaaaagtcaaggtccaaac 542  Q
    |||||||||||||||| ||  ||||||||||||||||||||||||||||||||| ||||||||| |||| ||||| ||||||||    
T  15739705 aaaaatgagatatattaacgaggacaccgtaattgttaccgcacaagatgtgccgaacaatcacaaaaatgtcaaagtccaaac 15739788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 459 - 542
Target Start/End: Original strand, 43019424 - 43019507
Alignment:
Q  459 aaaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgccaaacaatcacgaaaaagtcaaggtccaaac 542  Q
    |||||||||||||||| |  |||||||||||||||||||||||||||||||| ||||||||||  |||| ||||||||||||||    
T  43019424 aaaaatgagatatattaatacggacaccgtaattgttaccgcacaagatgtgtcaaacaatcataaaaatgtcaaggtccaaac 43019507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 459 - 542
Target Start/End: Original strand, 8890506 - 8890590
Alignment:
Q  459 aaaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgcc-aaacaatcacgaaaaagtcaaggtccaaac 542  Q
    |||||||||||||||| |  ||||||||||||||||||||||||||| |||||| ||||||||||| ||| ||||||||||||||    
T  8890506 aaaaatgagatatattaatacggacaccgtaattgttaccgcacaaggtgtgccaaaacaatcacggaaatgtcaaggtccaaac 8890590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 452 - 542
Target Start/End: Original strand, 7403388 - 7403479
Alignment:
Q  452 aacaataaaaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgcc-aaacaatcacgaaaaagtcaaggtccaaac 542  Q
    ||||| ||||||||||||||||| || ||||||| ||||||||||| ||||||| |||||| ||||||||||||||| | ||| ||||||||    
T  7403388 aacaagaaaaaatgagatatattaacacggacactgtaattgttacagcacaaggtgtgccaaaacaatcacgaaaatgccaaagtccaaac 7403479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 459 - 541
Target Start/End: Complemental strand, 20788937 - 20788854
Alignment:
Q  459 aaaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgccaaa-caatcacgaaaaagtcaaggtccaaa 541  Q
    ||||||||||||||||  | |||||||||||||||||||  |||||||||||||||| |||||| ||||| |||||||||||||    
T  20788937 aaaaatgagatatattaccacggacaccgtaattgttacatcacaagatgtgccaaagcaatcatgaaaatgtcaaggtccaaa 20788854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 459 - 542
Target Start/End: Complemental strand, 47686551 - 47686468
Alignment:
Q  459 aaaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgccaaacaatcacgaaaaagtcaaggtccaaac 542  Q
    |||||||||||||||| |  |||||||||||| ||||| ||||||||||||||||||||||||| |||| ||||  ||||||||    
T  47686551 aaaaatgagatatattcaaacggacaccgtaactgttatcgcacaagatgtgccaaacaatcacaaaaatgtcagagtccaaac 47686468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 459 - 528
Target Start/End: Original strand, 33845090 - 33845159
Alignment:
Q  459 aaaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgccaaacaatcacgaaaaa 528  Q
    |||||||||||||||| |  ||||||||| |||||||||||||||||||||||| ||||||||| |||||    
T  33845090 aaaaatgagatatattaatacggacaccgcaattgttaccgcacaagatgtgcccaacaatcacaaaaaa 33845159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 459 - 532
Target Start/End: Complemental strand, 160348 - 160275
Alignment:
Q  459 aaaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgccaaacaatcacgaaaaagtca 532  Q
    |||||||||||||||| |  ||||||||| |||||||| ||||||||||||||| ||||||||| |||| ||||    
T  160348 aaaaatgagatatattaatacggacaccgcaattgttatcgcacaagatgtgcccaacaatcacaaaaatgtca 160275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 459 - 528
Target Start/End: Complemental strand, 13271549 - 13271480
Alignment:
Q  459 aaaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgccaaacaatcacgaaaaa 528  Q
    |||||||||||||||| |  ||||||||| ||||||||| |||||||||||||| ||||||||| |||||    
T  13271549 aaaaatgagatatattaatacggacaccgcaattgttactgcacaagatgtgcccaacaatcacaaaaaa 13271480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 459 - 542
Target Start/End: Original strand, 16427031 - 16427116
Alignment:
Q  459 aaaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgcc-aaacaatcac-gaaaaagtcaaggtccaaac 542  Q
    |||||||||||||||| |  ||||||||||||||||||||| ||||| |||||| |||||||||| ||||| ||||||||| ||||    
T  16427031 aaaaatgagatatattaaaacggacaccgtaattgttaccgtacaaggtgtgccaaaacaatcacggaaaatgtcaaggtcgaaac 16427116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 459 - 528
Target Start/End: Complemental strand, 23643249 - 23643180
Alignment:
Q  459 aaaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgccaaacaatcacgaaaaa 528  Q
    |||||||||||||||| |  ||||||||| ||||||||||| |||||||||||| ||||||||| |||||    
T  23643249 aaaaatgagatatattaatacggacaccgcaattgttaccgtacaagatgtgcccaacaatcacaaaaaa 23643180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 460 - 542
Target Start/End: Complemental strand, 26184945 - 26184862
Alignment:
Q  460 aaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgcc-aaacaatcacgaaaaagtcaaggtccaaac 542  Q
    ||||||||||||||| |  | ||||||||||||||||||||||||| |||||| |||||||||| |||  |||||| |||||||    
T  26184945 aaaatgagatatattaatactgacaccgtaattgttaccgcacaaggtgtgccaaaacaatcacaaaagtgtcaagttccaaac 26184862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 459 - 519
Target Start/End: Original strand, 47418288 - 47418348
Alignment:
Q  459 aaaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgccaaacaat 519  Q
    |||||||||||||||| |  ||||||||| ||||||||||||||||| |||||| ||||||    
T  47418288 aaaaatgagatatattaatacggacaccgcaattgttaccgcacaaggtgtgcctaacaat 47418348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 1e-27; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 459 - 542
Target Start/End: Complemental strand, 34333471 - 34333388
Alignment:
Q  459 aaaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgccaaacaatcacgaaaaagtcaaggtccaaac 542  Q
    |||||||||||||||| || |||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||    
T  34333471 aaaaatgagatatattaacacggacaccgtaattgttaccgcacaaggcgtgccaaacaatcacgaaaatgtcaaggtccaaac 34333388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 459 - 542
Target Start/End: Original strand, 926604 - 926688
Alignment:
Q  459 aaaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgcca-aacaatcacgaaaaagtcaaggtccaaac 542  Q
    |||||||||||||||| || ||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||    
T  926604 aaaaatgagatatattaacacggacaccgtaattgttaccgcacaaggtgtgccagaacaatcacgaaaatgtcaaggtccaaac 926688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 459 - 542
Target Start/End: Original strand, 7312260 - 7312343
Alignment:
Q  459 aaaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgccaaacaatcacgaaaaagtcaaggtccaaac 542  Q
    |||||||||||||||| |  |||| |||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||    
T  7312260 aaaaatgagatatattaatacggataccgtaattgttaccgcacaagatatgccaaacaatcacaaaaatgtcaaggtccaaac 7312343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 459 - 540
Target Start/End: Original strand, 10312872 - 10312955
Alignment:
Q  459 aaaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgcc-aaacaatcac-gaaaaagtcaaggtccaa 540  Q
    |||||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||    
T  10312872 aaaaatgagatatattaacacggacaccgtaattgttaccgcacaagatgtgccaaaacaatcacggaaaatgtcaaggtccaa 10312955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 459 - 542
Target Start/End: Complemental strand, 19920886 - 19920803
Alignment:
Q  459 aaaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgccaaacaatcacgaaaaagtcaaggtccaaac 542  Q
    |||||||| ||||||| |  ||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||    
T  19920886 aaaaatgaaatatattaatacggacaccgtaattgtttccgcacaagatgtgccaaacaatcactaaaatgtcaaggtccaaac 19920803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 459 - 542
Target Start/End: Original strand, 15827193 - 15827278
Alignment:
Q  459 aaaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgcc-aaacaatcac-gaaaaagtcaaggtccaaac 542  Q
    |||||||||||||||| || ||||||||||||||||||||||||||| |||||| |||||||||| ||||| ||||||||||||||    
T  15827193 aaaaatgagatatattaacacggacaccgtaattgttaccgcacaaggtgtgccaaaacaatcacggaaaatgtcaaggtccaaac 15827278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 459 - 542
Target Start/End: Complemental strand, 40931185 - 40931101
Alignment:
Q  459 aaaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgcc-aaacaatcacgaaaaagtcaaggtccaaac 542  Q
    ||||||||||| |||| || | ||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||    
T  40931185 aaaaatgagatgtattaacacagacaccgtaattgttaccgcacaaggtgtgccaaaacaatcacgaaaatgtcaaggtccaaac 40931101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 459 - 532
Target Start/End: Original strand, 2363760 - 2363833
Alignment:
Q  459 aaaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgccaaacaatcacgaaaaagtca 532  Q
    |||||||||||||||| |  ||||||||  |||||||||||||||||||||||| ||||||||| |||| ||||    
T  2363760 aaaaatgagatatattaaaacggacaccacaattgttaccgcacaagatgtgcccaacaatcacaaaaatgtca 2363833  T

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Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 459 - 528
Target Start/End: Complemental strand, 10324229 - 10324160
Alignment:
Q  459 aaaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgccaaacaatcacgaaaaa 528  Q
    |||||||||||||||| |  ||||||||| ||||||||||||||||| |||||| ||||||||| |||||    
T  10324229 aaaaatgagatatattaatacggacaccgcaattgttaccgcacaaggtgtgcctaacaatcacaaaaaa 10324160  T

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Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 480 - 539
Target Start/End: Original strand, 7031823 - 7031883
Alignment:
Q  480 ggacaccgtaattgttaccgcacaagatgtgcc-aaacaatcacgaaaaagtcaaggtcca 539  Q
    |||||||||||||||||| ||||||| |||||| |||||||||| |||| |||||||||||    
T  7031823 ggacaccgtaattgttacagcacaaggtgtgccgaaacaatcactaaaatgtcaaggtcca 7031883  T

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Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 459 - 534
Target Start/End: Original strand, 7239593 - 7239669
Alignment:
Q  459 aaaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgcc-aaacaatcacgaaaaagtcaag 534  Q
    |||||||||||||||| ||  |||||||||||||||||| ||| ||| |||||| ||||||||||| ||| ||||||    
T  7239593 aaaaatgagatatattaacatggacaccgtaattgttactgcataaggtgtgccaaaacaatcacggaaatgtcaag 7239669  T

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Target: chr2 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 459 - 542
Target Start/End: Original strand, 4551660 - 4551743
Alignment:
Q  459 aaaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgccaaacaatcacgaaaaagtcaaggtccaaac 542  Q
    |||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  4551660 aaaaatgagatatattaatacggacaccgtaattgttaccgcacaagatgtgccaaacaatcacaaaaatgtcaaggtccaaac 4551743  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 459 - 542
Target Start/End: Complemental strand, 40914535 - 40914452
Alignment:
Q  459 aaaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgccaaacaatcacgaaaaagtcaaggtccaaac 542  Q
    |||||||||||||||| |  |||||||||||||||||| ||||||||||||||||||||||||| |||| ||||  ||||||||    
T  40914535 aaaaatgagatatattaaaacggacaccgtaattgttatcgcacaagatgtgccaaacaatcacaaaaatgtcagagtccaaac 40914452  T

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Target: chr1 (Bit Score: 64; Significance: 1e-27; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 459 - 542
Target Start/End: Complemental strand, 11909762 - 11909679
Alignment:
Q  459 aaaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgccaaacaatcacgaaaaagtcaaggtccaaac 542  Q
    |||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  11909762 aaaaatgagatatattaatacggacaccgtaattgttaccgcacaagatgtgccaaacaatcacaaaaatgtcaaggtccaaac 11909679  T

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Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 459 - 542
Target Start/End: Complemental strand, 12813860 - 12813777
Alignment:
Q  459 aaaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgccaaacaatcacgaaaaagtcaaggtccaaac 542  Q
    |||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||    
T  12813860 aaaaatgagatatattaacacggacaccgtaattgttaccgcacaaggtgtgccaaacaatcacgaaaatgtcaagttccaaac 12813777  T

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Target: chr1; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 459 - 550
Target Start/End: Original strand, 26059375 - 26059466
Alignment:
Q  459 aaaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgccaaacaatcacgaaaaagtcaaggtccaaactagattac 550  Q
    |||||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||| |||| |||||| ||||||| |||||||    
T  26059375 aaaaatgagatatattaacacggacaccgtaattgttaccgcacaaggtgtgccaaacaatcacaaaaatgtcaagatccaaacaagattac 26059466  T

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Target: chr1; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 459 - 542
Target Start/End: Original strand, 51051963 - 51052046
Alignment:
Q  459 aaaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgccaaacaatcacgaaaaagtcaaggtccaaac 542  Q
    |||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  51051963 aaaaatgagatatattaatacggacaccgtaattgttaccgcacaagatgtgccaaacaatcacaaaaatgtcaaggtccaaac 51052046  T

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Target: chr1; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 459 - 542
Target Start/End: Complemental strand, 24547723 - 24547639
Alignment:
Q  459 aaaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgcc-aaacaatcacgaaaaagtcaaggtccaaac 542  Q
    |||||||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||    
T  24547723 aaaaatgagatatattaacacggacaccgtaattgttaccgcacaagatgtgccaaaacaatcacggaaatgtcaaggtccaaac 24547639  T

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Target: chr1; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 459 - 542
Target Start/End: Original strand, 6259301 - 6259384
Alignment:
Q  459 aaaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgccaaacaatcacgaaaaagtcaaggtccaaac 542  Q
    |||||||||||||||| ||  |||||||||||||||||||| |||||||||||| ||||||||| |||| ||||| ||||||||    
T  6259301 aaaaatgagatatattaacgaggacaccgtaattgttaccgtacaagatgtgccgaacaatcacaaaaatgtcaaagtccaaac 6259384  T

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Target: chr1; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 459 - 550
Target Start/End: Original strand, 13351797 - 13351889
Alignment:
Q  459 aaaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgcc-aaacaatcacgaaaaagtcaaggtccaaactagattac 550  Q
    |||||||||||||||| || ||||||||||||||||||| ||||||  |||||| ||||||||||||||| ||| | |||||||| |||||||    
T  13351797 aaaaatgagatatattaacacggacaccgtaattgttactgcacaatgtgtgccgaaacaatcacgaaaatgtcgaagtccaaacaagattac 13351889  T

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Target: chr1; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 459 - 528
Target Start/End: Original strand, 6050084 - 6050153
Alignment:
Q  459 aaaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgccaaacaatcacgaaaaa 528  Q
    |||||||||||||||| |  ||||||||| |||||||||||||||||||||||| ||||||||| |||||    
T  6050084 aaaaatgagatatattaatacggacaccgcaattgttaccgcacaagatgtgcccaacaatcacaaaaaa 6050153  T

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Target: chr1; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 459 - 542
Target Start/End: Original strand, 4841882 - 4841966
Alignment:
Q  459 aaaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgccaaac-aatcacgaaaaagtcaaggtccaaac 542  Q
    |||||||||||||||| |  ||||||||||||||||||||||||||| |||||||||| ||||| |||||  ||||| |||||||    
T  4841882 aaaaatgagatatattaatacggacaccgtaattgttaccgcacaaggtgtgccaaacaaatcatgaaaatctcaagttccaaac 4841966  T

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Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 459 - 532
Target Start/End: Original strand, 35540532 - 35540605
Alignment:
Q  459 aaaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgccaaacaatcacgaaaaagtca 532  Q
    |||||||||||||||| |  ||||||||| |||||||| |||||| |||||||| ||||||||| |||| ||||    
T  35540532 aaaaatgagatatattaaaacggacaccgcaattgttatcgcacaggatgtgcccaacaatcacaaaaatgtca 35540605  T

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Target: scaffold0369 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 459 - 541
Target Start/End: Complemental strand, 11861 - 11779
Alignment:
Q  459 aaaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgccaaacaatcacgaaaaagtcaaggtccaaa 541  Q
    |||||||||||||||| |   ||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||    
T  11861 aaaaatgagatatattaatatggacaccgtaattgttaccgcacaagatgtgccaaacaatcacaaaaatgtcagggtccaaa 11779  T

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Target: scaffold0034 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 459 - 528
Target Start/End: Complemental strand, 106501 - 106432
Alignment:
Q  459 aaaaatgagatatatttactcggacaccgtaattgttaccgcacaagatgtgccaaacaatcacgaaaaa 528  Q
    |||||||||||||||| |  ||||||||| |||||||||||||||||||||||| ||||||||| |||||    
T  106501 aaaaatgagatatattaatacggacaccgcaattgttaccgcacaagatgtgcccaacaatcacaaaaaa 106432  T

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