View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13984_low_10 (Length: 493)

Name: NF13984_low_10
Description: NF13984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13984_low_10
NF13984_low_10
[»] chr7 (2 HSPs)
chr7 (345-454)||(22648712-22648821)
chr7 (345-455)||(1066905-1067014)
[»] chr4 (2 HSPs)
chr4 (351-455)||(661620-661724)
chr4 (384-485)||(45031192-45031293)
[»] chr2 (3 HSPs)
chr2 (384-455)||(12836554-12836625)
chr2 (17-188)||(12836180-12836357)
chr2 (349-455)||(41148862-41148968)
[»] chr1 (4 HSPs)
chr1 (345-455)||(47794352-47794462)
chr1 (351-453)||(33812220-33812322)
chr1 (351-453)||(33871691-33871793)
chr1 (384-440)||(17961102-17961158)
[»] chr3 (3 HSPs)
chr3 (351-455)||(12040164-12040268)
chr3 (345-444)||(44867240-44867339)
chr3 (385-439)||(404327-404381)
[»] chr5 (1 HSPs)
chr5 (384-455)||(30053494-30053565)


Alignment Details
Target: chr7 (Bit Score: 73; Significance: 4e-33; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 345 - 454
Target Start/End: Complemental strand, 22648821 - 22648712
Alignment:
Q  345 gaggggagagaaatttgttacaagattttaacnnnnnnngatatgtttaaaacaaactaaaatttcaatcatatccttgttttgctatatatacacaaag 444  Q
    |||| |||||||||||||||| ||||||||||       ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  22648821 gaggagagagaaatttgttacgagattttaacaaaaaaagatatgtttaaaacaaactaaaattccaatcatatccttgttttgctatatatacacaaag 22648722  T
Q  445 gctagtcttc 454  Q
     |||||||||    
T  22648721 actagtcttc 22648712  T

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Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 345 - 455
Target Start/End: Complemental strand, 1067014 - 1066905
Alignment:
Q  345 gaggggagagaaatttgttacaagattttaacnnnnnnngatatgtttaaaacaaactaaaatttcaatcatatccttgttttgctatatatacacaaag 444  Q
    |||| |||||||||||||||| ||||||||||        | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  1067014 gaggagagagaaatttgttacgagattttaacaaaaaaaaa-atgtttaaaacaaactaaaattccaatcatatccttgttttgctatatatacacaaag 1066916  T
Q  445 gctagtcttcc 455  Q
     ||||||||||    
T  1066915 actagtcttcc 1066905  T

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Target: chr4 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 351 - 455
Target Start/End: Complemental strand, 661724 - 661620
Alignment:
Q  351 agagaaatttgttacaagattttaacnnnnnnngatatgtttaaaacaaactaaaatttcaatcatatccttgttttgctatatatacacaaaggctagt 450  Q
    ||||||||||||||  ||||||||||       ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  661724 agagaaatttgttatgagattttaacaaaaaaagatatgtttaaaacaaactaaaattccaatcatatccttgttttgctatatatacacaaagactagt 661625  T
Q  451 cttcc 455  Q
    |||||    
T  661624 cttcc 661620  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 384 - 485
Target Start/End: Original strand, 45031192 - 45031293
Alignment:
Q  384 gatatgtttaaaacaaactaaaatttcaatcatatccttgttttgctatatatacacaaaggctagtcttccnnnnnnnagaggctattcattattcttc 483  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||| |||| ||||||||||       |||| |||||| |||||||||    
T  45031192 gatatgtttaaaacaaaataaaatttcaatcatatccttattttgttatatatacataaagactagtcttccttttttcagagcctattcgttattcttc 45031291  T
Q  484 tc 485  Q
    ||    
T  45031292 tc 45031293  T

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Target: chr2 (Bit Score: 68; Significance: 4e-30; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 384 - 455
Target Start/End: Original strand, 12836554 - 12836625
Alignment:
Q  384 gatatgtttaaaacaaactaaaatttcaatcatatccttgttttgctatatatacacaaaggctagtcttcc 455  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  12836554 gatatgtttaaaacaaactaaaattccaatcatatccttgttttgctatatatacacaaaggctagtcttcc 12836625  T

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Target: chr2; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 17 - 188
Target Start/End: Original strand, 12836180 - 12836357
Alignment:
Q  17 atcatcttgatttccaaggttctgtattccatgatcgattgatccatcgtcnnnnnnnnnnnnntag------gggttgtgtgttgttgttctagggatt 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||              ||      ||||| |||||||||| |||||| |||    
T  12836180 atcatcttgatttccaaggttctgtattccatgatcgattgatccatcgtcagagagagagagagagagattggggttatgtgttgttggtctagg-att 12836278  T
Q  111 agggttttgatgactgtgttttgtggatttgttattatacac--gtattgttggaaggattaaataagggcccgtttgtt 188  Q
    |||||||||||||||||||| |||||||| || |||||||||  ||||||||||||||||||||||| || |||||||||    
T  12836279 agggttttgatgactgtgttatgtggatt-gtgattatacacacgtattgttggaaggattaaataatggtccgtttgtt 12836357  T

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Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 349 - 455
Target Start/End: Complemental strand, 41148968 - 41148862
Alignment:
Q  349 ggagagaaatttgttacaagattttaacnnnnnnngatatgtttaaaacaaactaaaatttcaatcatatccttgttttgctatatatacacaaaggcta 448  Q
    |||| |||||||||||| |||||||||        ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||    
T  41148968 ggagggaaatttgttacgagattttaataaaaaaagatatgtttaaaacaaactaaaattccaatcatatccttgttttgctatatatacacaaagacta 41148869  T
Q  449 gtcttcc 455  Q
     ||||||    
T  41148868 atcttcc 41148862  T

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Target: chr1 (Bit Score: 66; Significance: 6e-29; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 345 - 455
Target Start/End: Complemental strand, 47794462 - 47794352
Alignment:
Q  345 gaggggagagaaatttgttacaagattttaacnnnnnnngatatgtttaaaacaaactaaaatttcaatcatatccttgttttgctatatatacacaaag 444  Q
    |||| |||||||||||||||| ||||||||||       |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  47794462 gaggagagagaaatttgttacgagattttaacaaaaaaggatatgttcaaaacaaactaaaattccaatcatatccttgttttgctatatatacacaaag 47794363  T
Q  445 gctagtcttcc 455  Q
     ||| ||||||    
T  47794362 actaatcttcc 47794352  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 351 - 453
Target Start/End: Original strand, 33812220 - 33812322
Alignment:
Q  351 agagaaatttgttacaagattttaacnnnnnnngatatgtttaaaacaaactaaaatttcaatcatatccttgttttgctatatatacacaaaggctagt 450  Q
    ||||||||||||||| ||||||||||        ||||||||| |||||||||||||| |||||||||||||||||||||||||||||| || | |||||    
T  33812220 agagaaatttgttacgagattttaacataaaaatatatgtttataacaaactaaaattccaatcatatccttgttttgctatatatacataatgactagt 33812319  T
Q  451 ctt 453  Q
    |||    
T  33812320 ctt 33812322  T

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Target: chr1; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 351 - 453
Target Start/End: Original strand, 33871691 - 33871793
Alignment:
Q  351 agagaaatttgttacaagattttaacnnnnnnngatatgtttaaaacaaactaaaatttcaatcatatccttgttttgctatatatacacaaaggctagt 450  Q
    ||||||||||||||| ||||||||||        ||||||||| |||||||||||||| |||||||||||||||||||||||||||||| || | |||||    
T  33871691 agagaaatttgttacgagattttaacataaaaatatatgtttataacaaactaaaattccaatcatatccttgttttgctatatatacataatgactagt 33871790  T
Q  451 ctt 453  Q
    |||    
T  33871791 ctt 33871793  T

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Target: chr1; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 384 - 440
Target Start/End: Original strand, 17961102 - 17961158
Alignment:
Q  384 gatatgtttaaaacaaactaaaatttcaatcatatccttgttttgctatatatacac 440  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  17961102 gatatgtttaaaacaaactaaaattccaatcatatccttgttttgctatatatacac 17961158  T

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Target: chr3 (Bit Score: 64; Significance: 9e-28; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 351 - 455
Target Start/End: Original strand, 12040164 - 12040268
Alignment:
Q  351 agagaaatttgttacaagattttaacnnnnnnngatatgtttaaaacaaactaaaatttcaatcatatccttgttttgctatatatacacaaaggctagt 450  Q
    ||||||||||||||  ||||||||||       ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||    
T  12040164 agagaaatttgttaggagattttaacaaaaaaagatatgtttaaaacaaactaaaattccaatcatatccttgttttgctatatatacataaagactagt 12040263  T
Q  451 cttcc 455  Q
    |||||    
T  12040264 cttcc 12040268  T

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Target: chr3; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 345 - 444
Target Start/End: Original strand, 44867240 - 44867339
Alignment:
Q  345 gaggggagagaaatttgttacaagattttaacnnnnnnngatatgtttaaaacaaactaaaatttcaatcatatccttgttttgctatatatacacaaag 444  Q
    |||| ||||||||||| |||||||||||||||        |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  44867240 gaggagagagaaatttattacaagattttaacaaaaaaatatatgtttaaaacaaattaaaattccaatcatatccttgttttgctatatatacacaaag 44867339  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 385 - 439
Target Start/End: Original strand, 404327 - 404381
Alignment:
Q  385 atatgtttaaaacaaactaaaatttcaatcatatccttgttttgctatatataca 439  Q
    |||||||||||||||||||||||| |||||||||||||||||| |||||||||||    
T  404327 atatgtttaaaacaaactaaaattccaatcatatccttgttttactatatataca 404381  T

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Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 384 - 455
Target Start/End: Original strand, 30053494 - 30053565
Alignment:
Q  384 gatatgtttaaaacaaactaaaatttcaatcatatccttgttttgctatatatacacaaaggctagtcttcc 455  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||    
T  30053494 gatatgtttaaaacaaactaaaattccaatcatatccttgttttgctatatatacgcaaagactagtcttcc 30053565  T

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