View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13984_low_11 (Length: 491)
Name: NF13984_low_11
Description: NF13984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13984_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 472
Target Start/End: Original strand, 18127924 - 18128397
Alignment:
| Q |
1 |
ggtttggaaaatcttatataaaaaatgtatttggtccctacccaagccaagacaaattaaacattgtctagcacataacatgtgcagtgggaatctactt |
100 |
Q |
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| T |
18127924 |
ggtttggaaaatcttatataaaaaatgtatttggtccctacccaagccaagacaaattaaacattgtctagcacataacatgtgcagtgggaatctactt |
18128023 |
T |
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| Q |
101 |
ttctctttgttccttgcatttccagcaaataggttggaaaggaggccaactctagtttgctcttagaaagcaannnnnnnnn--ataataatgtaacttg |
198 |
Q |
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| T |
18128024 |
ttctctttgttccttgcatttccagcaaataggttggaaaggaggccaactctagtttgctcttagaaagcaatttttttttttataataatgtaacttg |
18128123 |
T |
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| Q |
199 |
ttgatatgact--attactgtaacttgattataataatccacccccatgccggaaatatatttgattatggctaaatgacgatacttataataatttgat |
296 |
Q |
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| T |
18128124 |
ttgatatgactctattactgtaacttgattataataatcc--ccccatgccggaaatatatttgattatggctaaatgacgatacttataataatttgat |
18128221 |
T |
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| Q |
297 |
gataattttaataagttatcatcnnnnnnncttctttatttttgtataaaaccaaactccttttacaaaattagtgttatctcaagttagatttgacgtt |
396 |
Q |
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| T |
18128222 |
gataattttaataagttatcatctttttttcttctttatttttgtataaaaccaaactccttttacaaaattagtgttatctcaagttagatttgacgtc |
18128321 |
T |
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| Q |
397 |
tattgaaatcctatccgaattgaaagattagttgttacatatccacaatgaggataatcactccaaatctaattag |
472 |
Q |
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| T |
18128322 |
tattgcgatcctatccgaattgaaagattagttgttacatatccacaatgaggataatcactccagatctaattag |
18128397 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 100 - 136
Target Start/End: Original strand, 52105220 - 52105256
Alignment:
| Q |
100 |
tttctctttgttccttgcatttccagcaaataggttg |
136 |
Q |
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| T |
52105220 |
tttccctttgttccttacatttccagcaaataggttg |
52105256 |
T |
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