View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13984_low_13 (Length: 471)
Name: NF13984_low_13
Description: NF13984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13984_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Complemental strand, 27771459 - 27771086
Alignment:
| Q |
1 |
tagtagagttgattcaaaggcgccttcattgcgcgcttttagtgatttgtgtaatttgcaaggaagagaaagaataatcgaaattagagacgaagtttgt |
100 |
Q |
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| T |
27771459 |
tagtagagttgagtcgaaggcgccatcattgcgcgcttttagtgatttgtgtaatttgcaaggaagagaaagaataatcgaaattagagacgaagtttgt |
27771360 |
T |
|
| Q |
101 |
gaatcgatcggaaggtcagtgtctatggatcattcatttcaaaatggtttttcaattggtgatgtgttgaatatgaatgaagatgaagatgattcttgtg |
200 |
Q |
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| T |
27771359 |
gaatcgatcggaaggtcagtgtctatggatcattcatttcaaaatggtttttcaattggtgatgtgttgaatatgaatgaagatgaagatgattcttgtg |
27771260 |
T |
|
| Q |
201 |
aagaaggatgttcaatggatgttagttcatcaaagatatcacaaggagaaagtagtaaatcaaggtacaaaagaagagtgttgcattgtgttatgagtcc |
300 |
Q |
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| T |
27771259 |
aagaaggatgttcaatggatgttagttcatcaaagatatcacaaggagaaagtagtaaatcaaggtacaaaagaagagtgttgcattgtgttatgagtcc |
27771160 |
T |
|
| Q |
301 |
aattgcaatgaagagatcgttttctaatggaagattttcactaggtaaaattgatagaggaaaaaggcaaggaa |
374 |
Q |
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| T |
27771159 |
aattgcaatgaagagatcgttttctaatggaagattttcacttggtaaaattgatagaggaaaaaggcaaggaa |
27771086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 456
Target Start/End: Complemental strand, 27771038 - 27771005
Alignment:
| Q |
423 |
atgatatattaagaagagagatagaccaattttt |
456 |
Q |
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| T |
27771038 |
atgatatattaagaagagagacagaccaattttt |
27771005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 281 - 338
Target Start/End: Complemental strand, 12617343 - 12617286
Alignment:
| Q |
281 |
ttgcattgtgttatgagtccaattgcaatgaagagatcgttttctaatggaagatttt |
338 |
Q |
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||||||||||| | ||||||||||||||||||||||| ||||| | ||||||||||| |
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| T |
12617343 |
ttgcattgtgtgctaagtccaattgcaatgaagagatcattttcaagtggaagatttt |
12617286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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