View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13984_low_14 (Length: 429)

Name: NF13984_low_14
Description: NF13984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13984_low_14
NF13984_low_14
[»] chr7 (2 HSPs)
chr7 (14-413)||(34843776-34844175)
chr7 (346-400)||(30511102-30511156)
[»] chr6 (4 HSPs)
chr6 (345-402)||(14618979-14619036)
chr6 (347-402)||(14611141-14611196)
chr6 (349-399)||(14620560-14620610)
chr6 (345-373)||(32079965-32079993)
[»] chr3 (3 HSPs)
chr3 (349-405)||(35244113-35244169)
chr3 (345-404)||(41874454-41874513)
chr3 (349-405)||(35243944-35244000)
[»] chr4 (4 HSPs)
chr4 (346-400)||(52545222-52545276)
chr4 (349-405)||(24807483-24807539)
chr4 (345-405)||(8005848-8005908)
chr4 (345-401)||(51295218-51295274)
[»] scaffold0006 (1 HSPs)
scaffold0006 (345-402)||(39200-39257)
[»] chr1 (2 HSPs)
chr1 (345-402)||(902132-902189)
chr1 (345-401)||(33773145-33773201)
[»] chr2 (3 HSPs)
chr2 (349-405)||(25302758-25302814)
chr2 (349-405)||(25306753-25306809)
chr2 (349-403)||(41602398-41602452)
[»] chr5 (1 HSPs)
chr5 (349-382)||(8080966-8080999)


Alignment Details
Target: chr7 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 14 - 413
Target Start/End: Original strand, 34843776 - 34844175
Alignment:
Q  14 attattctgatgaaatcaaatctgtacagttgtatattgacacaaaactacgattaaaatttagtgagcaactaacatacttcttatgtttagattgctc 113  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34843776 attattctgatgaaatcaaatatgtacagttgtatattgacacaaaactacgattaaaatttagtgagcaactaacatacttcttatgtttagattgctc 34843875  T
Q  114 ttagaatttaggttcaatttaattcaatcttatacgatcggtttgtaatgtgaattattgcaacatacacactttctcaaaagctggacatttggagcgt 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  34843876 ttagaatttaggttcaatttaattcaatcttatacgatcggtttgtaatgtgagttattgcaacatacacactttctcaaaagctggacatttggagcgt 34843975  T
Q  214 gattcaagttgttcgatagaattgccccagcaatggctgacccaatgaatctttgataagcttcatattagaattttggttgagtttaacttaaccgtta 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  34843976 gattcaagttgttcgatagaattgccccagcaatggctgacccaatgaatctttgataagcttcatattagaattttggttgaatttaacttgaccgtta 34844075  T
Q  314 aaaaactagatattagagtgtttgcaaggtaagttagagttagttacacaactaaactctttatataggaacactcatgtatcatttcaatccatctttt 413  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  34844076 aaaaactagatattagagtgtttgtaaggtaagttagagttagttacacaactaaactctatatataggaacactcatgtatcatttcaatccatctttt 34844175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 400
Target Start/End: Original strand, 30511102 - 30511156
Alignment:
Q  346 gttagagttagttacacaactaaactctttatataggaacactcatgtatcattt 400  Q
    ||||||||||||||  |||||||||||| |||||||| |||| |||||| |||||    
T  30511102 gttagagttagttattcaactaaactctatatatagggacacccatgtaccattt 30511156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 7e-22; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 345 - 402
Target Start/End: Original strand, 14618979 - 14619036
Alignment:
Q  345 agttagagttagttacacaactaaactctttatataggaacactcatgtatcatttca 402  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  14618979 agttagagttagttacacaactaaactctatatataggaacactcatgtatcatttca 14619036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 347 - 402
Target Start/End: Original strand, 14611141 - 14611196
Alignment:
Q  347 ttagagttagttacacaactaaactctttatataggaacactcatgtatcatttca 402  Q
    ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  14611141 ttagagttagttacacaactaaactctatatataggaacactcgtgtatcatttca 14611196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 349 - 399
Target Start/End: Original strand, 14620560 - 14620610
Alignment:
Q  349 agagttagttacacaactaaactctttatataggaacactcatgtatcatt 399  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  14620560 agagttagttacacaactaaactctatatataggaaaactcatgtatcatt 14620610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 373
Target Start/End: Original strand, 32079965 - 32079993
Alignment:
Q  345 agttagagttagttacacaactaaactct 373  Q
    |||||||||||||||||||||||||||||    
T  32079965 agttagagttagttacacaactaaactct 32079993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 349 - 405
Target Start/End: Original strand, 35244113 - 35244169
Alignment:
Q  349 agagttagttacacaactaaactctttatataggaacactcatgtatcatttcaatc 405  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  35244113 agagttagttacacaactaaactctatatataggaacactcatgtatcatttcaatc 35244169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 345 - 404
Target Start/End: Original strand, 41874454 - 41874513
Alignment:
Q  345 agttagagttagttacacaactaaactctttatataggaacactcatgtatcatttcaat 404  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  41874454 agttagagttagttacacaactaaactctatatataggaacactcatgtaccatttcaat 41874513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 349 - 405
Target Start/End: Complemental strand, 35244000 - 35243944
Alignment:
Q  349 agagttagttacacaactaaactctttatataggaacactcatgtatcatttcaatc 405  Q
    ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  35244000 agagttaattacacaactaaactctatatataggaacactcatgtatcatttcaatc 35243944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 346 - 400
Target Start/End: Complemental strand, 52545276 - 52545222
Alignment:
Q  346 gttagagttagttacacaactaaactctttatataggaacactcatgtatcattt 400  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  52545276 gttagagttagttacacaactaaactctatatataggaacactcatgtatcattt 52545222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 349 - 405
Target Start/End: Original strand, 24807483 - 24807539
Alignment:
Q  349 agagttagttacacaactaaactctttatataggaacactcatgtatcatttcaatc 405  Q
    ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  24807483 agagttagttacacaactaaaatctatatataggaacactcatgtatcatttcaatc 24807539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 345 - 405
Target Start/End: Original strand, 8005848 - 8005908
Alignment:
Q  345 agttagagttagttacacaactaaactctttatataggaacactcatgtatcatttcaatc 405  Q
    ||||||| ||||||||  |||||| |||| |||||||||||||||||||||||||||||||    
T  8005848 agttagaattagttacttaactaatctctatatataggaacactcatgtatcatttcaatc 8005908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 345 - 401
Target Start/End: Original strand, 51295218 - 51295274
Alignment:
Q  345 agttagagttagttacacaactaaactctttatataggaacactcatgtatcatttc 401  Q
    ||||||||||||||||||||||||||  | |||||||||||||| ||| ||||||||    
T  51295218 agttagagttagttacacaactaaacattatatataggaacactaatgcatcatttc 51295274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 345 - 402
Target Start/End: Original strand, 39200 - 39257
Alignment:
Q  345 agttagagttagttacacaactaaactctttatataggaacactcatgtatcatttca 402  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  39200 agttaaagttagttacacaactaaactctatatataggaacactcatgtatcatttca 39257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 345 - 402
Target Start/End: Original strand, 902132 - 902189
Alignment:
Q  345 agttagagttagttacacaactaaactctttatataggaacactcatgtatcatttca 402  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  902132 agttagagttagttacacaattaaactctctatataggaacactcatgtatcatttca 902189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 345 - 401
Target Start/End: Original strand, 33773145 - 33773201
Alignment:
Q  345 agttagagttagttacacaactaaactctttatataggaacactcatgtatcatttc 401  Q
    |||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||    
T  33773145 agttagagttagttacacgactaaactctatatataagaacactcatgtatcatttc 33773201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 349 - 405
Target Start/End: Original strand, 25302758 - 25302814
Alignment:
Q  349 agagttagttacacaactaaactctttatataggaacactcatgtatcatttcaatc 405  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  25302758 agagttagttacacaactaaactctatatataggatcactcatgtatcatttcaatc 25302814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 349 - 405
Target Start/End: Original strand, 25306753 - 25306809
Alignment:
Q  349 agagttagttacacaactaaactctttatataggaacactcatgtatcatttcaatc 405  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||    
T  25306753 agagttagttacacagctaaactctatatataggaacactcatgtaacatttcaatc 25306809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 349 - 403
Target Start/End: Original strand, 41602398 - 41602452
Alignment:
Q  349 agagttagttacacaactaaactctttatataggaacactcatgtatcatttcaa 403  Q
    ||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||    
T  41602398 agagttagttacataactaaattctatatataggaacactcatgtatcatttcaa 41602452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 382
Target Start/End: Original strand, 8080966 - 8080999
Alignment:
Q  349 agagttagttacacaactaaactctttatatagg 382  Q
    ||||||||||||||||||||||||| ||||||||    
T  8080966 agagttagttacacaactaaactctctatatagg 8080999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University