View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13984_low_17 (Length: 390)
Name: NF13984_low_17
Description: NF13984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13984_low_17 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 16 - 269
Target Start/End: Original strand, 43978470 - 43978725
Alignment:
| Q |
16 |
tacttcttagggttgtataagtttaacaacttgatagaacaagaaagaaggaataaacaggggaaataagccagaggtttttctgcactaaccgattatt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43978470 |
tacttcttagggttgtataagtttaacaacttgatagaacaagaaagaaggaataaacaggggaaataagccagaggtttttctgcactaaccgattatt |
43978569 |
T |
|
| Q |
116 |
ccaataatggttcttattaaataagtgtcaaccatggctgcaaaattcaaagaagaagctgaagaaagacgatgtaaacaaatgaagaatgtttctcc-- |
213 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43978570 |
ccaataatggttcttattaaataagtgtctaccatggctgcaaaattcaaagaagaagctgaagaaagacgatgtaaacaaatgaagaatgtttctccaa |
43978669 |
T |
|
| Q |
214 |
nnnnnnnnnnnnncaaatgaagaatgcaaatgaaaattgatagctaaatatatata |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43978670 |
aaaaaaaaaaaaacaaatgaagaatgcaaatgaaaattgatagctaaatatatata |
43978725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 336 - 372
Target Start/End: Original strand, 43978792 - 43978828
Alignment:
| Q |
336 |
atgtgtacttaagcaatatgccataaataggtatttg |
372 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43978792 |
atgtgtacttaagcaatatgccataaataggtatttg |
43978828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University