View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13984_low_2 (Length: 646)
Name: NF13984_low_2
Description: NF13984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13984_low_2 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 631; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 631; E-Value: 0
Query Start/End: Original strand, 1 - 646
Target Start/End: Original strand, 34397148 - 34397794
Alignment:
| Q |
1 |
ggatggcttttgtacactgctgcttctgctggtgatttggagtttgtttatgaattgttgagaagagattctttgttggtttttggtgaaggagagtatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34397148 |
ggatggcttttgtacactgctgcttctgctggtgatttggagtttgtttatgaattgttgagaagagattctttgttggtttttggtgaaggagagtatg |
34397247 |
T |
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| Q |
101 |
gtgttactgatatgttttatgctgcagctaggagtaagaattctgaggtattcaacatgattcttgattttgctctcttaggaaaagattgtggtattgt |
200 |
Q |
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| T |
34397248 |
gtgttactgatatgttttatgctgcagctaggagtaagaattctgaggtattcaacatgattcttgattttgctctcttaggaaaagattgtggtattgt |
34397347 |
T |
|
| Q |
201 |
tgaattggatgaaggtgttggtggtggagttttcaagagggagatattgaatagggccattcatgctgctgctagaggagggaattgggaaatacttaag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
34397348 |
tgaattggatgaaggtgttggtggtggagttttcaagagggagatattgaatagggccattcatgctgctgctagaggagggaattgggaaatactaaag |
34397447 |
T |
|
| Q |
301 |
aagcagcttcttttagtaagtgcttctcagattttatcttatagagatgttcaaggatgtactgtcttgcattcagcagctggaagaggccaggtagagg |
400 |
Q |
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| T |
34397448 |
aagcagcttcttttagtaagtgcttctcagattttatcttatagagatgttcaaggatgtactgtcttgcattcagcagctggaagaggccaggtagagg |
34397547 |
T |
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| Q |
401 |
taagtactcacatggtttaattaacactatgcttgtacgattaaaaattaacacg-aaaaaatgtaatttacttgtaattgaaatatttatgacacatgc |
499 |
Q |
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| T |
34397548 |
taagtactcacatggtttaattaacactatgcttgtacgattaaaaattaacacgaaaaaaatgtaatttacttgtaattgaaatatttatgacacatgc |
34397647 |
T |
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| Q |
500 |
gaaagacctgcttgctatgaagtactgacatggatgctcagacattaacactgataatatttcaaaaattgaatgtaaatacatgtgtcagtattgtgtc |
599 |
Q |
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| T |
34397648 |
gaaagacctgcttgctatgaagtactgacatggatgctcagacattaacactgataatatttcaaaaattgaatgtaaatacatgtgtcagtattgtgtt |
34397747 |
T |
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| Q |
600 |
tcgttgtcgactatgtcacattctaaacactggatacgtctttaatc |
646 |
Q |
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| T |
34397748 |
tcgttgtcgactatgtcacattctaaacactggatacgtctttaatc |
34397794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 73; Significance: 5e-33; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 38831659 - 38831511
Alignment:
| Q |
1 |
ggatggcttttgtacactgctgcttctgctggtgatttggagtttgtttatgaattgttgagaagagattctttgttggtttttggtgaaggagagtatg |
100 |
Q |
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||||||||| | |||||||||||||| ||||||||| |||| ||||||| |||||||||||| ||||| |||| | |||||||| ||||| ||||||| |
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| T |
38831659 |
ggatggcttctttacactgctgcttcagctggtgatatggaatttgtttgtgaattgttgaggagagaatcttctcttgtttttggagaaggtgagtatg |
38831560 |
T |
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| Q |
101 |
gtgttactgatatgttttatgctgcagctaggagtaagaattctgaggt |
149 |
Q |
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| T |
38831559 |
gtgttactgatattttgtatgctgcagctagaagtaaaagttctgaggt |
38831511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 260 - 296
Target Start/End: Complemental strand, 38831418 - 38831382
Alignment:
| Q |
260 |
ttcatgctgctgctagaggagggaattgggaaatact |
296 |
Q |
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| T |
38831418 |
ttcatgctgctgctagaggtgggaattgggagatact |
38831382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 71 - 142
Target Start/End: Complemental strand, 7997140 - 7997069
Alignment:
| Q |
71 |
ctttgttggtttttggtgaaggagagtatggtgttactgatatgttttatgctgcagctaggagtaagaatt |
142 |
Q |
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| T |
7997140 |
ctttgttggttttcggtgaaggagaatatggtgttactgatatactttatgctgctgctagaagcaagaatt |
7997069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 71 - 142
Target Start/End: Original strand, 8021662 - 8021733
Alignment:
| Q |
71 |
ctttgttggtttttggtgaaggagagtatggtgttactgatatgttttatgctgcagctaggagtaagaatt |
142 |
Q |
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| T |
8021662 |
ctttgttggttttcggtgaaggagaatatggtgttactgatatactttatgctgctgctagaagcaagaatt |
8021733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 567 - 599
Target Start/End: Complemental strand, 40584004 - 40583972
Alignment:
| Q |
567 |
attgaatgtaaatacatgtgtcagtattgtgtc |
599 |
Q |
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|||||||||||| |||||||||||||||||||| |
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| T |
40584004 |
attgaatgtaaacacatgtgtcagtattgtgtc |
40583972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 564 - 599
Target Start/End: Complemental strand, 40876374 - 40876338
Alignment:
| Q |
564 |
aaaattgaatgtaaat-acatgtgtcagtattgtgtc |
599 |
Q |
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|||||||||||||||| |||||||||||||||||||| |
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| T |
40876374 |
aaaattgaatgtaaatcacatgtgtcagtattgtgtc |
40876338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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