View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13984_low_20 (Length: 366)

Name: NF13984_low_20
Description: NF13984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13984_low_20
NF13984_low_20
[»] chr5 (4 HSPs)
chr5 (14-347)||(14240551-14240884)
chr5 (14-347)||(41451560-41451893)
chr5 (14-347)||(41438391-41438724)
chr5 (14-347)||(14372474-14372807)
[»] chr3 (4 HSPs)
chr3 (67-347)||(22750268-22750548)
chr3 (31-335)||(22726961-22727265)
chr3 (45-335)||(22739732-22740022)
chr3 (217-335)||(22740747-22740865)
[»] chr8 (6 HSPs)
chr8 (227-347)||(2301225-2301345)
chr8 (227-347)||(2325444-2325564)
chr8 (277-331)||(5282655-5282709)
chr8 (277-331)||(5290242-5290296)
chr8 (277-331)||(14949405-14949459)
chr8 (277-331)||(15125916-15125970)
[»] scaffold0196 (1 HSPs)
scaffold0196 (278-329)||(13502-13553)
[»] chr6 (3 HSPs)
chr6 (223-329)||(11672961-11673067)
chr6 (265-329)||(11663919-11663983)
chr6 (247-323)||(11756738-11756814)
[»] scaffold0019 (1 HSPs)
scaffold0019 (248-329)||(7947-8028)


Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 14 - 347
Target Start/End: Complemental strand, 14240884 - 14240551
Alignment:
Q  14 agatatcaggcgttgttaaggtttgtggagaaaaggcctacgttgctcaatcaccatggattcaaagtggcaagatagaggataatatattgtttggcaa 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14240884 agatatcaggcgttgttaaggtttgtggagaaaaggcctacgttgctcaatcaccatggattcaaagtggcaagatagaggataatatattgtttggcaa 14240785  T
Q  114 acaaatggttagggaaaggtatgaaaaggtactcgaagcatgctccttacagaaggatctggaaatcttgtcatttggtgatcaaacagttataggcgag 213  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  14240784 acaaatggttagggaaaggtatgaaaaggtactcgaagcttgctacttaaagaaggatctggaaatcttgtcatttggtgatcaaacggttataggcgag 14240685  T
Q  214 cgcggaataaatttgagtggtggacagaaacaaagaatacaaattgcgcgcgctctttaccaagatgctgatatttatctatttgatgatccttttagtg 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  14240684 cgcggaataaatttgagtggtggacagaaacaaagaatacaaattgcgcgcgctctttaccaagatgctgatatctatctatttgatgatccttttagtg 14240585  T
Q  314 ctgtggatgctcatacaggatctcacctttttaa 347  Q
    ||||||||||||||||||||||||||||||||||    
T  14240584 ctgtggatgctcatacaggatctcacctttttaa 14240551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 14 - 347
Target Start/End: Complemental strand, 41451893 - 41451560
Alignment:
Q  14 agatatcaggcgttgttaaggtttgtggagaaaaggcctacgttgctcaatcaccatggattcaaagtggcaagatagaggataatatattgtttggcaa 113  Q
    |||||||||||||  ||||||||||||||  ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||  |    
T  41451893 agatatcaggcgtccttaaggtttgtggaacaaaggcctatgtcgctcaatcaccatggattcaaagtggcaagatagaggataatatattgtttggtga 41451794  T
Q  114 acaaatggttagggaaaggtatgaaaaggtactcgaagcatgctccttacagaaggatctggaaatcttgtcatttggtgatcaaacagttataggcgag 213  Q
    | | ||||||||||||||||||||||||||||| |||||||| |||||  |||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  41451793 aaacatggttagggaaaggtatgaaaaggtacttgaagcatgttccttgaagaaggatttggaaatcttgtcatttggtgatcagacagttataggcgag 41451694  T
Q  214 cgcggaataaatttgagtggtggacagaaacaaagaatacaaattgcgcgcgctctttaccaagatgctgatatttatctatttgatgatccttttagtg 313  Q
    || ||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  41451693 cgtggaataaatttgagtggtggacagaaacaaagaatacaaatagctcgtgctctttaccaagatgctgatatctatctatttgacgatccttttagtg 41451594  T
Q  314 ctgtggatgctcatacaggatctcacctttttaa 347  Q
    |||| |||||||||||||||||||||||||||||    
T  41451593 ctgttgatgctcatacaggatctcacctttttaa 41451560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 14 - 347
Target Start/End: Complemental strand, 41438724 - 41438391
Alignment:
Q  14 agatatcaggcgttgttaaggtttgtggagaaaaggcctacgttgctcaatcaccatggattcaaagtggcaagatagaggataatatattgtttggcaa 113  Q
    |||||||||||||  |||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||  |    
T  41438724 agatatcaggcgtccttaaggtttgtggaaaaaaggcctatgttgctcaattaccatggattcaaagtggcaagatagaggataatatattatttggtga 41438625  T
Q  114 acaaatggttagggaaaggtatgaaaaggtactcgaagcatgctccttacagaaggatctggaaatcttgtcatttggtgatcaaacagttataggcgag 213  Q
    | | ||||||||||||||||||||||||||||| ||||||||  ||||  |||||||| | ||||||||||||||||||||||| |||||||||||||||    
T  41438624 aaacatggttagggaaaggtatgaaaaggtacttgaagcatgtaccttgaagaaggatttagaaatcttgtcatttggtgatcagacagttataggcgag 41438525  T
Q  214 cgcggaataaatttgagtggtggacagaaacaaagaatacaaattgcgcgcgctctttaccaagatgctgatatttatctatttgatgatccttttagtg 313  Q
    || ||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  41438524 cgtggaataaatttgagtggtggacagaaacaaagaatacaaatagctcgtgctctttaccaagatgctgatatctatctatttgatgatccttttagtg 41438425  T
Q  314 ctgtggatgctcatacaggatctcacctttttaa 347  Q
    |||||||||||||||| |||||||||||||||||    
T  41438424 ctgtggatgctcatacgggatctcacctttttaa 41438391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 14 - 347
Target Start/End: Original strand, 14372474 - 14372807
Alignment:
Q  14 agatatcaggcgttgttaaggtttgtggagaaaaggcctacgttgctcaatcaccatggattcaaagtggcaagatagaggataatatattgtttggcaa 113  Q
    ||||||||||| |  |||| |||||||||  ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |    
T  14372474 agatatcaggcatccttaaagtttgtggaacaaaggcctatgttgctcaatcaccatggattcaaagtggcacgatagaggataatatattgtttggtga 14372573  T
Q  114 acaaatggttagggaaaggtatgaaaaggtactcgaagcatgctccttacagaaggatctggaaatcttgtcatttggtgatcaaacagttataggcgag 213  Q
    ||| ||||||| |||||||||||| | |||||| |||||||| ||| |  |||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  14372574 acacatggttaaggaaaggtatgagatggtacttgaagcatgttccctgaagaaggatctggaaatattgtcatttggtgatcagacagttataggcgag 14372673  T
Q  214 cgcggaataaatttgagtggtggacagaaacaaagaatacaaattgcgcgcgctctttaccaagatgctgatatttatctatttgatgatccttttagtg 313  Q
    || ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  14372674 cgtggaataaatttgagtggtggacagaaacagagaatacaaattgctcgcgctctttaccaagatgctgatatatatctatttgatgatccttttagtg 14372773  T
Q  314 ctgtggatgctcatacaggatctcacctttttaa 347  Q
    | ||||||||||||||||||||||||||||||||    
T  14372774 ccgtggatgctcatacaggatctcacctttttaa 14372807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 109; Significance: 9e-55; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 67 - 347
Target Start/End: Complemental strand, 22750548 - 22750268
Alignment:
Q  67 ccatggattcaaagtggcaagatagaggataatatattgtttggcaaacaaatggttagggaaaggtatgaaaaggtactcgaagcatgctccttacaga 166  Q
    |||||||| |||||| ||||||||||  |||| ||||||||||| ||  | ||||  ||| |||| ||||| ||||| || |||||||| ||  || |||    
T  22750548 ccatggatacaaagtagcaagatagaaaataacatattgtttgggaaggatatggaaaggcaaagatatgagaaggttcttgaagcatgttcactaaaga 22750449  T
Q  167 aggatctggaaatcttgtcatttggtgatcaaacagttataggcgagcgcggaataaatttgagtggtggacagaaacaaagaatacaaattgcgcgcgc 266  Q
    ||||||| || || || |||||||| ||||||||| ||||||| ||| | |||||||||||||| || ||||||||||||||| |||||||||| || ||    
T  22750448 aggatctcgagattttatcatttggcgatcaaacaattataggggagaggggaataaatttgagcggcggacagaaacaaagagtacaaattgctcgtgc 22750349  T
Q  267 tctttaccaagatgctgatatttatctatttgatgatccttttagtgctgtggatgctcatacaggatctcacctttttaa 347  Q
    | | || |||||||||||||| ||||||||||||||||| ||||||||| | |||||||||||||||||||| || |||||    
T  22750348 tttatatcaagatgctgatatatatctatttgatgatccgtttagtgctcttgatgctcatacaggatctcatctatttaa 22750268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 31 - 335
Target Start/End: Complemental strand, 22727265 - 22726961
Alignment:
Q  31 aaggtttgtggagaaaaggcctacgttgctcaatcaccatggattcaaagtggcaagatagaggataatatattgtttggcaaacaaatggttagggaaa 130  Q
    ||||||||||||  |||||| || |||||||||||||| ||||| || |||||||||||||| ||||||||| | ||||| | | | |||| ||||||||    
T  22727265 aaggtttgtggaacaaaggcttatgttgctcaatcaccgtggatacagagtggcaagatagaagataatatactatttggtagagagatggatagggaaa 22727166  T
Q  131 ggtatgaaaaggtactcgaagcatgctccttacagaaggatctggaaatcttgtcatttggtgatcaaacagttataggcgagcgcggaataaatttgag 230  Q
     |||| | ||||| || |||||||| || ||  |||| || || ||  | ||  ||||||||||||| ||  |||| || |||   ||||| ||||||||    
T  22727165 agtattagaaggttctagaagcatgttcattgaagaaagacctcgaggttttaccatttggtgatcagaccattattggagagaagggaatcaatttgag 22727066  T
Q  231 tggtggacagaaacaaagaatacaaattgcgcgcgctctttaccaagatgctgatatttatctatttgatgatccttttagtgctgtggatgctcataca 330  Q
    |||||||||||| |||||| ||||||| || || ||||||||||||||||||||||| |||||  | || ||||| |||||||| || ||||||||||||    
T  22727065 tggtggacagaagcaaagagtacaaatcgctcgtgctctttaccaagatgctgatatatatctgctcgacgatccctttagtgcagttgatgctcataca 22726966  T
Q  331 ggatc 335  Q
    |||||    
T  22726965 ggatc 22726961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 45 - 335
Target Start/End: Original strand, 22739732 - 22740022
Alignment:
Q  45 aaaggcctacgttgctcaatcaccatggattcaaagtggcaagatagaggataatatattgtttggcaaacaaatggttagggaaaggtatgaaaaggta 144  Q
    |||||| || ||||||||||| |||||||| || |||||||||||||| || |||||| | ||||| | | | |||| || ||||| |||||| |||||     
T  22739732 aaaggcttatgttgctcaatcgccatggatacagagtggcaagatagaagagaatatactatttggtagagagatggataaggaaaagtatgagaaggtt 22739831  T
Q  145 ctcgaagcatgctccttacagaaggatctggaaatcttgtcatttggtgatcaaacagttataggcgagcgcggaataaatttgagtggtggacagaaac 244  Q
    || |||||||| || ||  |||| || || ||  | ||  ||||| ||||||||||  |||| || |||   ||||| ||||||||||||||||||||||    
T  22739832 ctagaagcatgttcattgaagaaagacctcgaggttttaccatttcgtgatcaaaccattattggagagaaaggaatcaatttgagtggtggacagaaac 22739931  T
Q  245 aaagaatacaaattgcgcgcgctctttaccaagatgctgatatttatctatttgatgatccttttagtgctgtggatgctcatacaggatc 335  Q
    ||||| |||||||||| || |||||||||||| ||||||||||||||||  | || ||||| |||||||| || |||||||||||||||||    
T  22739932 aaagagtacaaattgctcgtgctctttaccaaaatgctgatatttatctgctcgacgatccctttagtgcagttgatgctcatacaggatc 22740022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 217 - 335
Target Start/End: Original strand, 22740747 - 22740865
Alignment:
Q  217 ggaataaatttgagtggtggacagaaacaaagaatacaaattgcgcgcgctctttaccaagatgctgatatttatctatttgatgatccttttagtgctg 316  Q
    ||||| |||||||||||||||||||| |||||| ||||||| || || ||||||||||||||||||||||| |||||  | |||||||| |||||||| |    
T  22740747 ggaatcaatttgagtggtggacagaagcaaagactacaaatcgctcgtgctctttaccaagatgctgatatatatctgctcgatgatccctttagtgcag 22740846  T
Q  317 tggatgctcatacaggatc 335  Q
    | |||||||||||||||||    
T  22740847 ttgatgctcatacaggatc 22740865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 227 - 347
Target Start/End: Original strand, 2301225 - 2301345
Alignment:
Q  227 tgagtggtggacagaaacaaagaatacaaattgcgcgcgctctttaccaagatgctgatatttatctatttgatgatccttttagtgctgtggatgctca 326  Q
    |||||||||||||||||||||||||||| || ||  | ||| |||| ||||||||||| || || || ||||||||||||||||||||||| ||||||||    
T  2301225 tgagtggtggacagaaacaaagaatacagatagctagagctgtttatcaagatgctgacatatacctttttgatgatccttttagtgctgtcgatgctca 2301324  T
Q  327 tacaggatctcacctttttaa 347  Q
    ||| ||  ||||||| |||||    
T  2301325 tactggcactcacctctttaa 2301345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 227 - 347
Target Start/End: Original strand, 2325444 - 2325564
Alignment:
Q  227 tgagtggtggacagaaacaaagaatacaaattgcgcgcgctctttaccaagatgctgatatttatctatttgatgatccttttagtgctgtggatgctca 326  Q
    |||||||||||||||||||||||||||| || ||  | ||| |||| ||||||||||| || || || ||||||||||||||||||||||| ||||||||    
T  2325444 tgagtggtggacagaaacaaagaatacagatagctagagctgtttatcaagatgctgacatatacctttttgatgatccttttagtgctgtcgatgctca 2325543  T
Q  327 tacaggatctcacctttttaa 347  Q
    ||| ||  ||||||| |||||    
T  2325544 taccggcactcacctctttaa 2325564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 277 - 331
Target Start/End: Complemental strand, 5282709 - 5282655
Alignment:
Q  277 gatgctgatatttatctatttgatgatccttttagtgctgtggatgctcatacag 331  Q
    |||||||||||||||||  ||||||||||||||||||| || |||||||||||||    
T  5282709 gatgctgatatttatctccttgatgatccttttagtgcagttgatgctcatacag 5282655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 331
Target Start/End: Complemental strand, 5290296 - 5290242
Alignment:
Q  277 gatgctgatatttatctatttgatgatccttttagtgctgtggatgctcatacag 331  Q
    ||||||||||| |||||  ||||||||||||| ||||| || |||||||||||||    
T  5290296 gatgctgatatctatctccttgatgatcctttcagtgcagttgatgctcatacag 5290242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 331
Target Start/End: Complemental strand, 14949459 - 14949405
Alignment:
Q  277 gatgctgatatttatctatttgatgatccttttagtgctgtggatgctcatacag 331  Q
    ||||||||||| |||||  ||||||||||||| ||||| || |||||||||||||    
T  14949459 gatgctgatatctatcttcttgatgatcctttcagtgcagttgatgctcatacag 14949405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 331
Target Start/End: Original strand, 15125916 - 15125970
Alignment:
Q  277 gatgctgatatttatctatttgatgatccttttagtgctgtggatgctcatacag 331  Q
    ||||||||||| |||||  ||||||||||||| ||||| || |||||||||||||    
T  15125916 gatgctgatatctatcttcttgatgatcctttcagtgcagttgatgctcatacag 15125970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0196 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 278 - 329
Target Start/End: Original strand, 13502 - 13553
Alignment:
Q  278 atgctgatatttatctatttgatgatccttttagtgctgtggatgctcatac 329  Q
    |||||||||| |||||||| |||||||| ||||||||||| |||||||||||    
T  13502 atgctgatatatatctattggatgatccatttagtgctgttgatgctcatac 13553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 329
Target Start/End: Complemental strand, 11673067 - 11672961
Alignment:
Q  223 aatttgagtggtggacagaaacaaagaatacaaattgcgcgcgctctttaccaagatgctgatatttatctatttgatgatccttttagtgctgtggatg 322  Q
    ||||| ||||| || || |||||| |||| ||| |||| || ||||| || ||| |||||||| | |||||||| |||||||| ||||||||||| ||||    
T  11673067 aatttaagtggaggtcaaaaacaacgaattcaacttgctcgtgctctctatcaaaatgctgatttatatctattggatgatccatttagtgctgttgatg 11672968  T
Q  323 ctcatac 329  Q
    | |||||    
T  11672967 cgcatac 11672961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 329
Target Start/End: Original strand, 11663919 - 11663983
Alignment:
Q  265 gctctttaccaagatgctgatatttatctatttgatgatccttttagtgctgtggatgctcatac 329  Q
    |||||||| ||  |||||||||| ||||| || |||||||| ||||||||||| ||||| |||||    
T  11663919 gctctttatcagaatgctgatatatatctcttggatgatccatttagtgctgttgatgcacatac 11663983  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 323
Target Start/End: Original strand, 11756738 - 11756814
Alignment:
Q  247 agaatacaaattgcgcgcgctctttaccaagatgctgatatttatctatttgatgatccttttagtgctgtggatgc 323  Q
    ||||| ||| |||| || |||||||| ||| |||||||| | ||||| || ||||||||||| |||||||| |||||    
T  11756738 agaattcaacttgctcgagctctttatcaaaatgctgatgtatatctcttggatgatcctttcagtgctgttgatgc 11756814  T

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Target: scaffold0019 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 248 - 329
Target Start/End: Complemental strand, 8028 - 7947
Alignment:
Q  248 gaatacaaattgcgcgcgctctttaccaagatgctgatatttatctatttgatgatccttttagtgctgtggatgctcatac 329  Q
    |||| ||| |||| || |||||||| ||  |||||||||| |||||||| |||||||| ||||||||||| ||||| |||||    
T  8028 gaattcaacttgctcgtgctctttatcagaatgctgatatatatctattagatgatccatttagtgctgttgatgcgcatac 7947  T

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