View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13984_low_23 (Length: 344)
Name: NF13984_low_23
Description: NF13984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13984_low_23 |
 | |
|
| [»] scaffold0002 (2 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 87 - 330
Target Start/End: Complemental strand, 6954632 - 6954389
Alignment:
| Q |
87 |
ggataggtgcagagactcaatggaagctgttctaacaaatggagttgacaacatttactctttcaatagaataatcttgattgatcaaatcagtcactcc |
186 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6954632 |
ggataggtgcagagactcaatggaagctgttctaacaaatggagttgacaacatttactctttcaatagaataatcttgattgatcaaatcagtcactcc |
6954533 |
T |
|
| Q |
187 |
accatagtctgatggatcttttgaataactgattaatcagacgagaataaagatagagtcccattctacatgtcaataccgacatcaatgaaatttttag |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6954532 |
accatagtctgatggatcttttgaataactgattaatcagacgagaataaagatagagtcccattctacatgtcaataccgacatcaatgaaatttttag |
6954433 |
T |
|
| Q |
287 |
taagaggaaaatccgtcgactttagaaatcgtgagggttcaagt |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6954432 |
taagaggaaaatccgtcgactttagaaatcgtgagggttcaagt |
6954389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 87 - 330
Target Start/End: Original strand, 18183457 - 18183700
Alignment:
| Q |
87 |
ggataggtgcagagactcaatggaagctgttctaacaaatggagttgacaacatttactctttcaatagaataatcttgattgatcaaatcagtcactcc |
186 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18183457 |
ggataggtgcagagactcaatggaagctgttctaacaaatggagttgacaacatttactctttcaatagaataatcttgattgatcaaatcagtcactcc |
18183556 |
T |
|
| Q |
187 |
accatagtctgatggatcttttgaataactgattaatcagacgagaataaagatagagtcccattctacatgtcaataccgacatcaatgaaatttttag |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18183557 |
accatagtctgatggatcttttgaataactgattaatcagacgagaataaagatagagtcccattctacatgtcaataccgacatcaatgaaatttttag |
18183656 |
T |
|
| Q |
287 |
taagaggaaaatccgtcgactttagaaatcgtgagggttcaagt |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18183657 |
taagaggaaaatccgtcgactttagaaatcgtgagggttcaagt |
18183700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 87 - 229
Target Start/End: Original strand, 35160160 - 35160302
Alignment:
| Q |
87 |
ggataggtgcagagactcaatggaagctgttctaacaaatggagttgacaacatttactctttcaatagaataatcttgattgatcaaatcagtcactcc |
186 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35160160 |
ggataggtgcagagactcaatggaagctgttctaacaattggagttgacaacatttactctttcaatagaataatcttgattgatcaaatcagtcactcc |
35160259 |
T |
|
| Q |
187 |
accatagtctgatggatcttttgaataactgattaatcagacg |
229 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
35160260 |
accatagtctgattgatcttttgaataactgattaatgagacg |
35160302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 101 - 309
Target Start/End: Complemental strand, 13622242 - 13622034
Alignment:
| Q |
101 |
actcaatggaagctgttctaacaaatggagttgacaacatttactctttcaatagaataatcttgattgatcaaatcagtcactccaccatagtctgatg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13622242 |
actcaatggaagctgttctaacaaatggagttgacaacatttactctttcaatagaataatattgattgatcaaatcagtcactccaccatagtctgatg |
13622143 |
T |
|
| Q |
201 |
gatcttttgaataactgattaatcagacgagaataaagatagagtcccattctacatgtcaataccgacatcaatgaaatttttagtaagaggaaaatcc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13622142 |
gatcttttgaataactgattaatcagacgaaaataaagatcgagtcccattctacatgtcaataccgacatcaatgaaatttttagtaagaggaaaatcc |
13622043 |
T |
|
| Q |
301 |
gtcgacttt |
309 |
Q |
| |
|
||||||||| |
|
|
| T |
13622042 |
gtcgacttt |
13622034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 87 - 200
Target Start/End: Complemental strand, 28712690 - 28712577
Alignment:
| Q |
87 |
ggataggtgcagagactcaatggaagctgttctaacaaatggagttgacaacatttactctttcaatagaataatcttgattgatcaaatcagtcactcc |
186 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28712690 |
ggataggtgcagagactcaatggaagctgttctaacaaatggagttgacaatatttactctttcaatagaataatcttgattgatcaaatcagtcactcc |
28712591 |
T |
|
| Q |
187 |
accatagtctgatg |
200 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
28712590 |
accatagtttgatg |
28712577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 217 - 330
Target Start/End: Original strand, 247350 - 247463
Alignment:
| Q |
217 |
gattaatcagacgagaataaagatagagtcccattctacatgtcaataccgacatcaatgaaatttttagtaagaggaaaatccgtcgactttagaaatc |
316 |
Q |
| |
|
|||||||| |||||| | ||||| ||||||||||||||||||||||||| |||| ||||||||||| |||||| ||||||||||||||||||| || | |
|
|
| T |
247350 |
gattaatcggacgaggacaaagagagagtcccattctacatgtcaatactgacaacaatgaaatttctagtaaaaggaaaatccgtcgactttttaagtt |
247449 |
T |
|
| Q |
317 |
gtgagggttcaagt |
330 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
247450 |
gtgagggttcaagt |
247463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 246997 - 247042
Alignment:
| Q |
87 |
ggataggtgcagagactcaatggaagctgttctaacaaatggagtt |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
246997 |
ggataggtgcagagactcaatggaagctgttctaacgaatcgagtt |
247042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University