View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13984_low_25 (Length: 331)
Name: NF13984_low_25
Description: NF13984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13984_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 97 - 314
Target Start/End: Original strand, 33785415 - 33785629
Alignment:
| Q |
97 |
aatacaaagtgcattagtagtctaggcttttgccaaagtagcttatcaacggttgttttaaattttcaaaagcatatcctaattagactaatgcactttg |
196 |
Q |
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| T |
33785415 |
aatacaaagtgcattagtagtctaggcttttgccaaagtagcttatcaacggttgttttaaattttcaaaagcatatcctaattagactaatgcactttg |
33785514 |
T |
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| Q |
197 |
tattcaagggttgagtccaaattgttcaaacttttagaccaataatacaccacctatgtttgaacacttatatatcaacatgagcaatccttacttagtc |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
33785515 |
tattcaagggttgagtccaaattgttcaaacttttagacc---aatacaccacctatgtttgaacacttatatatcaacatgaacaatccttacttagtc |
33785611 |
T |
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| Q |
297 |
ataaacccaactaaaaag |
314 |
Q |
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|||||||||||||||||| |
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| T |
33785612 |
ataaacccaactaaaaag |
33785629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 33785331 - 33785383
Alignment:
| Q |
15 |
gacctagaaactaagatggaatgcaatcatagttaggcaaggaaataagccaa |
67 |
Q |
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| T |
33785331 |
gacctagaagctaagatggaatgcaatcatagttaggcaaggaaataagccaa |
33785383 |
T |
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