View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13984_low_27 (Length: 308)
Name: NF13984_low_27
Description: NF13984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13984_low_27 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 10 - 308
Target Start/End: Complemental strand, 27771844 - 27771546
Alignment:
| Q |
10 |
tccaagaatatcgccgcgaaaattgtcaagtttcaacctttggtttagatgatgctcaaataaaatccattgcagtttttagctacaaaaaaggagatgc |
109 |
Q |
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| T |
27771844 |
tccaagaaaatcgccgcgaaaattgtcaagtttcaacctttggtttagatgatgctcaaataaaatccattgcagtttttagctacaaaaaaggagatgc |
27771745 |
T |
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| Q |
110 |
nnnnnnnagtactactgtcacagattgttcagtttgtctaagtgagtttcaagatgatgaaagtgttagacttttaccaatgtgtaaccatgtttttcat |
209 |
Q |
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| T |
27771744 |
tttttttagtactactgtcacagattgttcagtttgtctaagtgagtttcaagatgatgaaagtgttagacttttaccaatgtgtaaccatgtttttcat |
27771645 |
T |
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| Q |
210 |
cttccttgtattgatacatggcttaaatctaactctagttgtcctctatgtcgttctagcgtattcacttcgaatgcttcaatacacaatgttcaagtt |
308 |
Q |
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| T |
27771644 |
cttccttgtattgatacatggcttaaatctaactctagttgtcctctatgtcgttctagcgtattcacttcgaatgcttcaacacatcatgttcaagtt |
27771546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 234
Target Start/End: Complemental strand, 37504182 - 37504077
Alignment:
| Q |
129 |
acagattgttcagtttgtctaagtgagtttcaagatgatgaaagtgttagacttttaccaatgtgtaaccatgtttttcatcttccttgtattgatacat |
228 |
Q |
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| T |
37504182 |
acagagtgttctgtttgtctaggtgaatttcaagaggaagagagtctcagaattttgcctaagtgtagccacgcttttcatatcccttgtattgatactt |
37504083 |
T |
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| Q |
229 |
ggctta |
234 |
Q |
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| T |
37504082 |
ggctta |
37504077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 129 - 263
Target Start/End: Complemental strand, 12617922 - 12617788
Alignment:
| Q |
129 |
acagattgttcagtttgtctaagtgagtttcaagatgatgaaagtgttagacttttaccaatgtgtaaccatgtttttcatcttccttgtattgatacat |
228 |
Q |
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| T |
12617922 |
acagattgttctgtttgtctaaacgagtttcaagacgatgagagtattagacttttacctaaatgtagccatgcttttcatcttccttgtattgatacat |
12617823 |
T |
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| Q |
229 |
ggcttaaatctaactctagttgtcctctatgtcgt |
263 |
Q |
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| T |
12617822 |
ggctcaaatctcattctaattgtcctctttgtcgt |
12617788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 130 - 234
Target Start/End: Complemental strand, 37227965 - 37227861
Alignment:
| Q |
130 |
cagattgttcagtttgtctaagtgagtttcaagatgatgaaagtgttagacttttaccaatgtgtaaccatgtttttcatcttccttgtattgatacatg |
229 |
Q |
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| T |
37227965 |
cagattgttctgtttgtttgagtgagtttgaagaagatgagaatcttagacttttgccaaagtgtaaccatgcttttcatttaccttgtattgatacttg |
37227866 |
T |
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| Q |
230 |
gctta |
234 |
Q |
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| T |
37227865 |
gctta |
37227861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 1867028 - 1867112
Alignment:
| Q |
150 |
agtgagtttcaagatgatgaaagtgttagacttttaccaatgtgtaaccatgtttttcatcttccttgtattgatacatggctta |
234 |
Q |
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| T |
1867028 |
agtgagtttgaagaagatgagaatcttagacttttacctaagtgtcatcatgcttttcatttactttgtattgatacttggctta |
1867112 |
T |
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