View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13984_low_28 (Length: 307)
Name: NF13984_low_28
Description: NF13984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13984_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 8 - 289
Target Start/End: Complemental strand, 18245905 - 18245624
Alignment:
| Q |
8 |
cagcacagattgttccttgaataacaaccaacacctccgaagcaccggggtgagtgtgaagtggaataactccacctgcggctaaatctaaacgcgcaag |
107 |
Q |
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| T |
18245905 |
cagcacagattgttccttgaataacaaccaacacctccgaagcaccggggtgagtgtgaagtggaataactccacctgcggctaaatctaaacgcgcaag |
18245806 |
T |
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| Q |
108 |
ggaaattccaagaccgtttaaaccagcaaattgcgcgtcgaatgcaggggtcacagctgctttgataatgtttgaggtgtttccggctgcagctaggccg |
207 |
Q |
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| T |
18245805 |
ggaaattccaagaccgtttaaaccagcaaattgcgcgtcgaatgcaggggtcacagctgctttgataatgtttgaggtgtttccggctgcagctaggccg |
18245706 |
T |
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| Q |
208 |
tggtaggcgaagtcattttcggttacttttgatggtgttttgcaagaatatccggcggggccatttggtaaattgtaatctg |
289 |
Q |
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| T |
18245705 |
tggtaggcgaagtcattttcggttacttttgatggtgttttgcaagaatatccggcggggccatttggtaaattgtaatctg |
18245624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 8 - 289
Target Start/End: Complemental strand, 18253009 - 18252728
Alignment:
| Q |
8 |
cagcacagattgttccttgaataacaaccaacacctccgaagcaccggggtgagtgtgaagtggaataactccacctgcggctaaatctaaacgcgcaag |
107 |
Q |
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| T |
18253009 |
cagcactgattgttcctttaataacaaccaacacttccgaagcaccggggtgtgtgtgaagtggaataacaccaccaacggctatatctaaacgagcaat |
18252910 |
T |
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| Q |
108 |
ggaaattccaagaccgtttaaaccagcaaattgcgcgtcgaatgcaggggtcacagctgctttgataatgtttgaggtgtttccggctgcagctaggccg |
207 |
Q |
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| T |
18252909 |
ggaaattccaagaccgtttacaccgggaaattgtgcgtctattgcagtggtaacagcggctttgataatgtttgtggtgtttccagctgcggctaggccg |
18252810 |
T |
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| Q |
208 |
tggtaggcgaagtcattttcggttacttttgatggtgttttgcaagaatatccggcggggccatttggtaaattgtaatctg |
289 |
Q |
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|||||| |||||||||| |||||||||||||||||| ||||||||||||||| || |||||||||||| ||||||||||| |
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| T |
18252809 |
tggtagacgaagtcattcacggttacttttgatggtggtttgcaagaatatccagccgggccatttggtgcattgtaatctg |
18252728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 8 - 289
Target Start/End: Original strand, 18256559 - 18256840
Alignment:
| Q |
8 |
cagcacagattgttccttgaataacaaccaacacctccgaagcaccggggtgagtgtgaagtggaataactccacctgcggctaaatctaaacgcgcaag |
107 |
Q |
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|||||| ||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||| |||||| ||||||||| |||| |
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| T |
18256559 |
cagcactgattgttcctttaataacaaccaacacttccgaagcaccggggtgtgtgtgaagtggaataacaccacctacggctatatctaaacgtgcaat |
18256658 |
T |
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| Q |
108 |
ggaaattccaagaccgtttaaaccagcaaattgcgcgtcgaatgcaggggtcacagctgctttgataatgtttgaggtgtttccggctgcagctaggccg |
207 |
Q |
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||| |||||||||||||||| ||| | |||||| ||||| | ||||| ||| ||||| |||||||||||||||| ||||||||| ||||| ||||||||| |
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| T |
18256659 |
ggatattccaagaccgtttacaccgggaaattgtgcgtctattgcagtggtaacagcggctttgataatgtttgtggtgtttccagctgcggctaggccg |
18256758 |
T |
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| Q |
208 |
tggtaggcgaagtcattttcggttacttttgatggtgttttgcaagaatatccggcggggccatttggtaaattgtaatctg |
289 |
Q |
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|||||| |||||||||| |||||||||||||||||| ||||||||||||||| || |||||||||||| ||||||||||| |
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| T |
18256759 |
tggtagacgaagtcattcacggttacttttgatggtggtttgcaagaatatccagccgggccatttggtgcattgtaatctg |
18256840 |
T |
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