View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13984_low_3 (Length: 602)
Name: NF13984_low_3
Description: NF13984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13984_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 564; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 15 - 586
Target Start/End: Original strand, 45459137 - 45459708
Alignment:
| Q |
15 |
aatattcaaaatgtgtgtgtcatgttcttcattgacaatgatgttcttaattttactaataataatgttgtttcccttatctataacctgttttgacata |
114 |
Q |
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| T |
45459137 |
aatattcaaaatgtgtgtgtcatgttcttcattgacaatgatgttcttaattttactaataataatgttgtttcccttatctataacctgttttgacata |
45459236 |
T |
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| Q |
115 |
acaaaaatattgtcccagtaccctgcatacagcagttacagcaactacctcacccaaacccaactagcaaccgaaataaactcgagacaaacgataacag |
214 |
Q |
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| T |
45459237 |
acaaaaatattgtcccagtaccctgcatacagcagttacagcaactacctcacccaaacccaactagcaaccgaaataaactcgagacaaacgataacag |
45459336 |
T |
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| Q |
215 |
ttcttgcagtcgataacagtgggatggcacctatctcaggaaaaccaatggatgtgatcaagaaggtgttaagcatccacgtcatcctcgactactttga |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45459337 |
ttcttgcagtcgataacagtgggatggcacctatctcaggaaaaccaatggatgtgatcaagaaggtgttaagcatccacgtcatcctcgactactttga |
45459436 |
T |
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| Q |
315 |
tgttcaaaaattccagcacatgggaaatcaacccataactgtcagcacattgtttcaatccagtggacaagctaagggatcggaaggtttcatgaaagtc |
414 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
45459437 |
tgttcaaaaattccagcacatgggaaatcaacctataactgtcagcacattgtttcaatccagtggacaagctaagggatcggagggtttcatgaaagtc |
45459536 |
T |
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| Q |
415 |
acagatcttagcacaggtgctgtcacttttacctctccttctgatcctaatggaacaggtgccaatttggttaaagctgttgtggcacaaccatacaata |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45459537 |
acagatcttagcacaggtgctgtcacttttacctctccttctgatcctaatggaacaggtgccaatttggttaaagctgttgtggcacaaccatacaata |
45459636 |
T |
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| Q |
515 |
tttcagtggtgcagatcagcactgtcattttgccaccatctttgcttgcttcctccaatgccacatcacatg |
586 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45459637 |
tttcagtggtgcagatcagcactgtcattttgccaccatctttgcttgcttcctccaatgccacatcacatg |
45459708 |
T |
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