View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13984_low_32 (Length: 284)
Name: NF13984_low_32
Description: NF13984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13984_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 7e-95; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 23 - 242
Target Start/End: Original strand, 54793532 - 54793751
Alignment:
| Q |
23 |
aatttctattgttttaggggttaaatgaaatgctgacgggtattaataaaactaatattgggacgaaaagaatgggagaccttgatgagaaagtttgtgt |
122 |
Q |
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| T |
54793532 |
aatttctattgttttaggggttaaatgaaatgctgacgggtattaataaaactaatattgggacgaaaagaatgggagaccttgatgagaaggtttttgt |
54793631 |
T |
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| Q |
123 |
gaaagtctgaaagaaaagatttctttctgaagaagaagctgggatgaaggccgtggagctttgctctgtttggcatgagaatgtgaaaaattcagcgtgg |
222 |
Q |
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| T |
54793632 |
gcaagtctgcaagaaaagatttgtttctcaagaagaagctgggatgaaggccatggagctttgctctgtttggcaggagaatgtgaaaaattcagcatgg |
54793731 |
T |
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| Q |
223 |
caccatttgaaagtggtcag |
242 |
Q |
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| T |
54793732 |
cacccttttaaagtggtcag |
54793751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 34 - 242
Target Start/End: Original strand, 52286224 - 52286432
Alignment:
| Q |
34 |
ttttaggggttaaatgaaatgctgacgggtattaataaaactaatattgggacgaaaagaatgggagaccttgatgagaaagtttgtgtgaaagtctgaa |
133 |
Q |
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| T |
52286224 |
ttttaggggttaaatgaaatgctgactggtaataataaaactaatattgggacgaaaagaatgggagaccttgatcagaaagtttttgtgaatgtctgca |
52286323 |
T |
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| Q |
134 |
agaaaagatttctttctgaagaagaagctgggatgaaggccgtggagctttgctctgtttggcatgagaatgtgaaaaattcagcgtggcaccatttgaa |
233 |
Q |
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| T |
52286324 |
agaaaagatttctttctgaagaagaagctgggatgaaggccatggagctttgctctttttggcaggagaatgtgaagaattcagcttggcacccttttaa |
52286423 |
T |
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| Q |
234 |
agtggtcag |
242 |
Q |
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| T |
52286424 |
agtcgtcag |
52286432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 23 - 118
Target Start/End: Complemental strand, 54776049 - 54775954
Alignment:
| Q |
23 |
aatttctattgttttaggggttaaatgaaatgctgacgggtattaataaaactaatattgggacgaaaagaatgggagaccttgatgagaaagttt |
118 |
Q |
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| T |
54776049 |
aatttctattgttttaggggttaaatgaaatggtgacgggtattaataaaactaatattgggacgaaaagaatgggagaccttgatgagaaggttt |
54775954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 23 - 243
Target Start/End: Original strand, 801382 - 801596
Alignment:
| Q |
23 |
aatttctattgttttaggggttaaatgaaatgctgacgggtattaataaaactaatattgggacgaaaagaatgggagaccttgatgagaaagtttgtgt |
122 |
Q |
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||||||||||||||||||||||||||||||||||||| ||| || |||||||||||| || || || |||||||||||||| |||| |||| ||| |
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| T |
801382 |
aatttctattgttttaggggttaaatgaaatgctgactggtgccaa---aactaatattggcaccaagaggatgggagaccttgaccagaaggtttttgt |
801478 |
T |
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| Q |
123 |
gaaagtctgaaagaaaagatttctttctgaagaagaagctgggatgaaggccgtggagctttgctctgtttggcatgagaatgtgaaaaattcagcgtgg |
222 |
Q |
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| T |
801479 |
gaatgcctgcaagaaaagattttcttctgatgaag---ctgggataaaggccgttgagctttgctctttatggcaggaaaatgtgaagaactcagcttgg |
801575 |
T |
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| Q |
223 |
caccatttgaaagtggtcagt |
243 |
Q |
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|||| ||| |||||||||||| |
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| T |
801576 |
cacccttttaaagtggtcagt |
801596 |
T |
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