View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13984_low_4 (Length: 585)
Name: NF13984_low_4
Description: NF13984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13984_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 129 - 568
Target Start/End: Original strand, 36426648 - 36427084
Alignment:
| Q |
129 |
aaatataaagtagtattgcatttgaagttgtgtagtaaattctttaaaagtttaaaaagtgtcactcataacacagttnnnnnnnnnngtgtcactctta |
228 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
36426648 |
aaatataaagtagtattgcatttgaagttgtgtagttaattctttaaaagtttaaaaagtgtcactcataacacagttaaaaaaa---gtgtcactctta |
36426744 |
T |
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| Q |
229 |
acataaaatttcctttgttgtcttccctaataaaacatcaccaaacacttgtaagcattttcttttaaggtgttattatgaaatagaatttaaagatgat |
328 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
36426745 |
acataaaatttcctttgttgtcttccttaataaaacatcaccaaacacttgtaagcattttctttaaaggtgttattatgaaatagaatttaaagatgat |
36426844 |
T |
|
| Q |
329 |
gtcatgaagttaaattctttaaaatgtcaagttnnnnnnntcataacttgtaccccnnnnnnncatcatagcagtggaacttaaaatcattgttcggtca |
428 |
Q |
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| T |
36426845 |
gtcatgaagttaaattctttaaaatgtcaagttaaaaaaatcataacttgtaccccaaaaaaacatcatagcagtggaacttaaaatcattgttcggtca |
36426944 |
T |
|
| Q |
429 |
tatttgaaattttctaaaaacatatttatggagagtctaactaaactaaatctattctaaccatatccctttaaaacataattgtcaaatcaattcaaaa |
528 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36426945 |
tatttgacattttctaaaaacatatttatggagagtctaactaaactaaatctattctaaccatatccctttaaaacataattgtcaaatcaattcaaaa |
36427044 |
T |
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| Q |
529 |
agaagttatggctaagaggagaagtgtgtcaatataattt |
568 |
Q |
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| T |
36427045 |
agaagttatggctaagaggagaagtatgtcaatataattt |
36427084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 36426313 - 36426361
Alignment:
| Q |
6 |
agtgagaagaaataaaagaagtgtgaggatatgttaggctggtctaata |
54 |
Q |
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| T |
36426313 |
agtgagaagaaataaaagaagtgtgaggatatgttaggccggtctaata |
36426361 |
T |
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