View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13984_low_41 (Length: 227)
Name: NF13984_low_41
Description: NF13984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13984_low_41 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 11658359 - 11658579
Alignment:
| Q |
7 |
cttctcatataaggatctgataccatattaagaaagtgaattgagaatcctaaaagacaaaatgaagaacattgtgaaagaaattctgttattcattagt |
106 |
Q |
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| T |
11658359 |
cttctcatataaggatctgataccatattaagaaagtgaattgagaatcctaaaagagaaaatgaagaacattgtgaaagaaattctgttattcattagt |
11658458 |
T |
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| Q |
107 |
tgagtttgttacaatggtggtgaattattactgcactatatcatagcctttctaactgacataacagttgtacatttttatgtggcaagttagttagagc |
206 |
Q |
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| T |
11658459 |
tgagtttgttacaatgatggtgaattattactgcactatatcatagcctttctaactgacataacagttgtacatttttatgtggcaagttagttagagc |
11658558 |
T |
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| Q |
207 |
tattggagatgacttgtttat |
227 |
Q |
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| T |
11658559 |
tattggagatgacttgtttat |
11658579 |
T |
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Target: chr1 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 31 - 128
Target Start/End: Original strand, 14931914 - 14932011
Alignment:
| Q |
31 |
atattaagaaagtgaattgagaatcctaaaagacaaaatgaagaacattgtgaaagaaattctgttattcattagttgagtttgttacaatggtggtg |
128 |
Q |
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| T |
14931914 |
atattaagaaagtgaattgagaattctagaagagaaaattgagagcatagtgaaagaaattctgttattcatcaattgagtttgttacaatgatggtg |
14932011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 142 - 224
Target Start/End: Original strand, 14932053 - 14932135
Alignment:
| Q |
142 |
ctatatcatagcctttctaactgacataacagttgtacatttttatgtggcaagttagttagagctattggagatgacttgtt |
224 |
Q |
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| T |
14932053 |
ctatatcagggcctttctaattgtcataacagttgtacatgcttatgtggcaagttagttcgagttatgggagataacttgtt |
14932135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 224
Target Start/End: Original strand, 15584042 - 15584123
Alignment:
| Q |
143 |
tatatcatagcctttctaactgacataacagttgtacatttttatgtggcaagttagttagagctattggagatgacttgtt |
224 |
Q |
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| T |
15584042 |
tatatgatagcctttctaactgtcataatagaagtacaagcttatgtgacaagtaagttagagctatggtagatgacttgtt |
15584123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 125
Target Start/End: Original strand, 15583930 - 15583979
Alignment:
| Q |
76 |
cattgtgaaagaaattctgttattcattagttgagtttgttacaatggtg |
125 |
Q |
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| T |
15583930 |
cattgtgcaagaaattatgttattcatcaattgagtttgttacagtggtg |
15583979 |
T |
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