View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13984_low_44 (Length: 222)
Name: NF13984_low_44
Description: NF13984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13984_low_44 |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 20 - 206
Target Start/End: Complemental strand, 53444086 - 53443900
Alignment:
| Q |
20 |
atcgtctctcgattcagccaatctatttgctactattactgcttctgttgttgtcgtagataacaacaactctaatgctgataagattaacaatgtggtt |
119 |
Q |
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| T |
53444086 |
atcgtctctcgattcagccaatctagttgctgctattactgctgctgttgttgtcgtagataacaacaactccaatgccgataagattaacaatgtggtt |
53443987 |
T |
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| Q |
120 |
aacgctaaccctaaaaaacccgcttggaagaacacatccaatggcctcgttgttgctgaggtcagtcctgtaatgggtgctgtctct |
206 |
Q |
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| T |
53443986 |
aacgctaaccctaaaaaacccgcttggaagaacacatccaatggcctcgttgttgctgaggtcagtcctgtaatgggtgctgtctct |
53443900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 109 - 206
Target Start/End: Complemental strand, 53401408 - 53401311
Alignment:
| Q |
109 |
acaatgtggttaacgctaaccctaaaaaacccgcttggaagaacacatccaatggcctcgttgttgctgaggtcagtcctgtaatgggtgctgtctct |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
53401408 |
acaatgtggttaacgctaaccctaaaaaacccgcttggaagaacacatccaatggcctcgttgttgctgaggtcaatcctgtaatgggtgctgtctct |
53401311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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