View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13984_low_6 (Length: 554)

Name: NF13984_low_6
Description: NF13984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13984_low_6
NF13984_low_6
[»] chr4 (26 HSPs)
chr4 (41-536)||(16844388-16844893)
chr4 (41-107)||(37777459-37777525)
chr4 (41-95)||(24969254-24969308)
chr4 (41-104)||(40089328-40089390)
chr4 (48-109)||(2790981-2791042)
chr4 (59-110)||(35780574-35780625)
chr4 (41-107)||(19498313-19498379)
chr4 (41-95)||(32128404-32128458)
chr4 (41-107)||(34027388-34027454)
chr4 (41-91)||(38352489-38352539)
chr4 (41-95)||(54083478-54083532)
chr4 (414-523)||(24219133-24219242)
chr4 (41-95)||(10431442-10431496)
chr4 (41-107)||(16882627-16882693)
chr4 (41-95)||(37514570-37514624)
chr4 (41-95)||(45560704-45560758)
chr4 (42-95)||(55255092-55255145)
chr4 (41-93)||(1105445-1105497)
chr4 (59-107)||(54779441-54779489)
chr4 (59-90)||(35463958-35463989)
chr4 (41-95)||(5128983-5129037)
chr4 (41-95)||(17679229-17679283)
chr4 (41-95)||(47127993-47128047)
chr4 (41-95)||(48208462-48208516)
chr4 (42-91)||(38209842-38209891)
chr4 (59-107)||(3850595-3850643)
[»] chr5 (34 HSPs)
chr5 (361-536)||(37638340-37638514)
chr5 (361-536)||(37822498-37822672)
chr5 (361-536)||(37710101-37710275)
chr5 (402-536)||(37394278-37394412)
chr5 (174-314)||(37709922-37710056)
chr5 (174-281)||(37531424-37531529)
chr5 (174-281)||(37592631-37592736)
chr5 (174-281)||(37694990-37695095)
chr5 (219-314)||(37394481-37394576)
chr5 (41-108)||(38869593-38869660)
chr5 (41-95)||(16199026-16199080)
chr5 (406-536)||(37402390-37402520)
chr5 (406-536)||(37531738-37531868)
chr5 (406-536)||(37592842-37592972)
chr5 (406-536)||(37695233-37695363)
chr5 (451-536)||(37434393-37434478)
chr5 (41-109)||(16799556-16799624)
chr5 (174-270)||(37822032-37822126)
chr5 (41-95)||(27923897-27923951)
chr5 (41-88)||(9364113-9364160)
chr5 (238-308)||(37402566-37402636)
chr5 (41-107)||(40389765-40389831)
chr5 (41-95)||(15480229-15480283)
chr5 (41-95)||(19523105-19523159)
chr5 (42-95)||(34756615-34756668)
chr5 (47-91)||(7670743-7670787)
chr5 (60-104)||(28822576-28822620)
chr5 (41-93)||(30853280-30853332)
chr5 (501-536)||(37701422-37701457)
chr5 (41-95)||(16592845-16592899)
chr5 (41-95)||(31881590-31881644)
chr5 (41-95)||(36188019-36188073)
chr5 (252-281)||(37531565-37531594)
chr5 (44-92)||(22987470-22987518)
[»] chr3 (22 HSPs)
chr3 (41-108)||(44708281-44708348)
chr3 (195-290)||(14552511-14552606)
chr3 (44-107)||(48156942-48157005)
chr3 (41-112)||(53507117-53507188)
chr3 (41-110)||(43207474-43207543)
chr3 (41-108)||(9878919-9878986)
chr3 (41-95)||(50939468-50939522)
chr3 (41-95)||(34290874-34290928)
chr3 (41-95)||(54407391-54407445)
chr3 (41-95)||(50258734-50258788)
chr3 (42-95)||(27078819-27078872)
chr3 (42-95)||(27084616-27084669)
chr3 (42-95)||(36716276-36716329)
chr3 (42-95)||(38681348-38681401)
chr3 (41-90)||(48720530-48720579)
chr3 (42-95)||(54619454-54619507)
chr3 (41-95)||(3954852-3954906)
chr3 (41-95)||(13795199-13795253)
chr3 (61-110)||(11467754-11467803)
chr3 (59-96)||(25373642-25373679)
chr3 (42-91)||(36605862-36605911)
chr3 (41-93)||(53149457-53149509)
[»] chr6 (14 HSPs)
chr6 (41-110)||(17353756-17353825)
chr6 (41-109)||(20711952-20712020)
chr6 (41-108)||(28075587-28075654)
chr6 (41-107)||(19986966-19987032)
chr6 (41-95)||(27788922-27788976)
chr6 (48-110)||(235466-235528)
chr6 (41-95)||(23070889-23070943)
chr6 (42-95)||(13727650-13727703)
chr6 (41-95)||(12083640-12083694)
chr6 (41-95)||(19741223-19741277)
chr6 (41-91)||(30832667-30832717)
chr6 (54-95)||(21280345-21280386)
chr6 (42-95)||(21479296-21479349)
chr6 (54-95)||(27314777-27314818)
[»] chr7 (14 HSPs)
chr7 (41-107)||(47985202-47985268)
chr7 (41-108)||(38415108-38415175)
chr7 (41-95)||(48984077-48984131)
chr7 (41-95)||(24525918-24525972)
chr7 (41-106)||(25010254-25010319)
chr7 (41-108)||(19691896-19691964)
chr7 (41-92)||(20091514-20091565)
chr7 (41-95)||(23551305-23551359)
chr7 (41-95)||(28749593-28749647)
chr7 (41-108)||(10329643-10329710)
chr7 (41-95)||(12596429-12596483)
chr7 (59-109)||(26253067-26253117)
chr7 (42-95)||(18777019-18777072)
chr7 (63-107)||(223552-223596)
[»] chr2 (14 HSPs)
chr2 (41-107)||(26715931-26715997)
chr2 (41-95)||(9045844-9045898)
chr2 (41-95)||(27506975-27507029)
chr2 (41-93)||(24410250-24410302)
chr2 (41-95)||(10762799-10762853)
chr2 (42-95)||(4505691-4505744)
chr2 (41-86)||(8327488-8327533)
chr2 (41-95)||(3952911-3952965)
chr2 (42-95)||(3155015-3155068)
chr2 (42-95)||(6964804-6964857)
chr2 (41-95)||(7162689-7162743)
chr2 (41-95)||(12337689-12337743)
chr2 (42-95)||(34693159-34693212)
chr2 (42-95)||(34715571-34715624)
[»] chr8 (12 HSPs)
chr8 (41-109)||(42600582-42600650)
chr8 (45-95)||(10917206-10917256)
chr8 (41-95)||(23606855-23606909)
chr8 (41-110)||(23798495-23798564)
chr8 (41-95)||(20003876-20003930)
chr8 (42-95)||(2952473-2952526)
chr8 (42-95)||(3048774-3048827)
chr8 (42-95)||(5860996-5861049)
chr8 (59-109)||(45193876-45193926)
chr8 (41-95)||(45472203-45472257)
chr8 (42-95)||(30883122-30883175)
chr8 (58-102)||(4322502-4322546)
[»] chr1 (21 HSPs)
chr1 (41-108)||(9173255-9173322)
chr1 (41-108)||(27559446-27559513)
chr1 (41-95)||(1367111-1367165)
chr1 (41-95)||(13913716-13913770)
chr1 (41-95)||(40502024-40502078)
chr1 (45-108)||(44895466-44895529)
chr1 (42-109)||(51607674-51607741)
chr1 (41-91)||(19955547-19955597)
chr1 (41-95)||(14146217-14146271)
chr1 (41-95)||(17168781-17168835)
chr1 (41-95)||(23181723-23181777)
chr1 (42-95)||(27906949-27907002)
chr1 (42-95)||(44655551-44655604)
chr1 (59-95)||(5027992-5028028)
chr1 (41-95)||(3406335-3406389)
chr1 (41-95)||(3440431-3440485)
chr1 (41-95)||(6771708-6771762)
chr1 (41-95)||(6888481-6888535)
chr1 (41-95)||(10912094-10912148)
chr1 (59-109)||(12037587-12037637)
chr1 (41-95)||(41697279-41697333)
[»] scaffold0039 (1 HSPs)
scaffold0039 (41-107)||(106379-106445)
[»] scaffold0027 (1 HSPs)
scaffold0027 (41-109)||(4147-4215)
[»] scaffold0070 (1 HSPs)
scaffold0070 (41-95)||(1023-1077)


Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 41 - 536
Target Start/End: Complemental strand, 16844893 - 16844388
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctgattctcgatttacctaaatgtgggctacctacc 140  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  16844893 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctgatcctcgatttacctaaatgtgggctacctacc 16844794  T
Q  141 aaccaggagacattgagatnnnnnnnn-gttcaaaagttgaagcaattaagtcttgatcatttattcaacnnnnnnn-tcttgaaagtaaccaaaaagca 238  Q
    |||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||    
T  16844793 aaccaggagacattgagataaaaaaaaagttcaaaagttgaagcaattaagtcttgatcatttattcaacaaaaaaaatcttgaaagtaaccaaaaagca 16844694  T
Q  239 attgatcactataaatttcttatttgttcaacaacttacaatatatagcacattggtattaaaagatatatatatactacatccct------gagaaatt 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||    
T  16844693 attgatcactataaatttcttatttgttcaacaacttacaatatatagcacattggtattaaaagatatatatatactacatcccttaaactgagaaatt 16844594  T
Q  333 -agattaattacaaacagnnnnnnn-gacaagattaattacaaacagttgtatctacatatttgnnnnnnnccctcatccaattaattcattcttcggcg 430  Q
     |||||||||||||||||        ||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||    
T  16844593 cagattaattacaaacagttttttttgacaagattaattacaaacagttgtatctacatatttgaaaaaaaccctcatccaattaattcattcttcggcg 16844494  T
Q  431 atttgcggttgctctgttgattgttcttttcaatcttatgttaaacatacgttcaacatgtcttgcgaggcattggggttttccagtgaagaagaataca 530  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  16844493 atttgcggttgctctgttgattgttcttttcaatcttatgttaaacatacgttcaacatgtcttgcaaggcattggggttttccagtgaagaagaataca 16844394  T
Q  531 ttatat 536  Q
    ||||||    
T  16844393 ttatat 16844388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 41 - 107
Target Start/End: Original strand, 37777459 - 37777525
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctg 107  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||  ||||||||||    
T  37777459 ttgaggcccatgattgagggaggtccagctctgttgagctgtttgcaccccctcaaggccgggcctg 37777525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 41 - 95
Target Start/End: Complemental strand, 24969308 - 24969254
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  24969308 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctca 24969254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 41 - 104
Target Start/End: Complemental strand, 40089390 - 40089328
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctcatagccgggc 104  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||| |||||||    
T  40089390 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgca-cccctcatggccgggc 40089328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 48 - 109
Target Start/End: Original strand, 2790981 - 2791042
Alignment:
Q  48 ccatgattgaaggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctgat 109  Q
    |||||| ||| |||| |||||||||||||||||||||||||||||||| || ||||||||||    
T  2790981 ccatgactgagggagacccagctctgttgagctgtttgcaccccctcagagtcgggcctgat 2791042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 59 - 110
Target Start/End: Original strand, 35780574 - 35780625
Alignment:
Q  59 ggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctgatt 110  Q
    ||||||||||||| ||||||||||||||||||||||  ||||||||||||||    
T  35780574 ggaggcccagctcggttgagctgtttgcaccccctcggagccgggcctgatt 35780625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 41 - 107
Target Start/End: Complemental strand, 19498379 - 19498313
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctg 107  Q
    ||||||||||||||||  ||||||||||| |||||||||| |||||||||| |||  ||||||||||    
T  19498379 ttgaggcccatgattgggggaggcccagcactgttgagctatttgcaccccgtcagggccgggcctg 19498313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 41 - 95
Target Start/End: Complemental strand, 32128458 - 32128404
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    |||||| |||| | ||| |||||||||||||||||||||||||||||||||||||    
T  32128458 ttgaggtccataactgagggaggcccagctctgttgagctgtttgcaccccctca 32128404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 41 - 107
Target Start/End: Complemental strand, 34027454 - 34027388
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctg 107  Q
    ||||||||||||| ||| |||| |||||||||||||||| |||||||| |||||| |||| ||||||    
T  34027454 ttgaggcccatgactgagggagacccagctctgttgagcagtttgcactccctcagagccaggcctg 34027388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 41 - 91
Target Start/End: Original strand, 38352489 - 38352539
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcacccc 91  Q
    ||||||||||||| | | |||||||||||||||||||||||||||||||||    
T  38352489 ttgaggcccatgactaagggaggcccagctctgttgagctgtttgcacccc 38352539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 54083478 - 54083532
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    ||||||||||||| ||| ||| |||||||||| ||||||||||||||||||||||    
T  54083478 ttgaggcccatgactgagggatgcccagctctattgagctgtttgcaccccctca 54083532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 414 - 523
Target Start/End: Complemental strand, 24219242 - 24219133
Alignment:
Q  414 taattcattcttcggcgatttgcggttgctctgttgattgttcttttcaatcttatgttaaacatacgttcaacatgtcttgcgaggcattggggttttc 513  Q
    ||||||||||||| |||||||||     || | ||| |||| ||||||||||||||| |||| || | ||||||||||||||| || ||||| ||||| |    
T  24219242 taattcattcttctgcgatttgcaccaactttcttgtttgtccttttcaatcttatgctaaatatgctttcaacatgtcttgcaagccattgaggtttcc 24219143  T
Q  514 cagtgaagaa 523  Q
    ||||||||||    
T  24219142 cagtgaagaa 24219133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 10431442 - 10431496
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    |||||||||||  |||| |||||||||||||  ||||||||||||||||||||||    
T  10431442 ttgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 10431496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 107
Target Start/End: Original strand, 16882627 - 16882693
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctg 107  Q
    ||||||| ||||| | | ||| ||||||||||||||||||||||||||| ||||| | |||||||||    
T  16882627 ttgaggctcatgactaagggaagcccagctctgttgagctgtttgcacctcctcagaaccgggcctg 16882693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 95
Target Start/End: Complemental strand, 37514624 - 37514570
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    |||||||||||  ||| ||||||||||||||  ||||||||||||||||||||||    
T  37514624 ttgaggcccatccttggaggaggcccagctcgtttgagctgtttgcaccccctca 37514570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 45560704 - 45560758
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    |||||||||||  |||| |||||||||||||  ||||||||||||||||||||||    
T  45560704 ttgaggcccatctttgagggaggcccagctcgtttgagctgtttgcaccccctca 45560758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 42 - 95
Target Start/End: Complemental strand, 55255145 - 55255092
Alignment:
Q  42 tgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    ||||||||||  |||| |||||||||||||  ||||||||||||||||||||||    
T  55255145 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 55255092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 93
Target Start/End: Complemental strand, 1105497 - 1105445
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccct 93  Q
    |||||||||||  |||| |||||||||||||  ||||||||||||||||||||    
T  1105497 ttgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccct 1105445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 59 - 107
Target Start/End: Complemental strand, 54779489 - 54779441
Alignment:
Q  59 ggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctg 107  Q
    ||||||||||||| |||||||||||||||| ||||||  ||||||||||    
T  54779489 ggaggcccagctcggttgagctgtttgcactccctcagggccgggcctg 54779441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 90
Target Start/End: Complemental strand, 35463989 - 35463958
Alignment:
Q  59 ggaggcccagctctgttgagctgtttgcaccc 90  Q
    ||||||||||||||||||||||||||||||||    
T  35463989 ggaggcccagctctgttgagctgtttgcaccc 35463958  T

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Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 5128983 - 5129037
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    |||||||| ||  |||| |||||||||||||  ||||||||||||||||||||||    
T  5128983 ttgaggcctatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 5129037  T

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Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 41 - 95
Target Start/End: Complemental strand, 17679283 - 17679229
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    |||||||||||  |||| |||||| ||||||  ||||||||||||||||||||||    
T  17679283 ttgaggcccatccttgagggaggctcagctcgtttgagctgtttgcaccccctca 17679229  T

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Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 41 - 95
Target Start/End: Complemental strand, 47128047 - 47127993
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    |||||||||||  |||| |||||||||||||  ||| ||||||||||||||||||    
T  47128047 ttgaggcccatccttgagggaggcccagctcgtttgggctgtttgcaccccctca 47127993  T

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Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 41 - 95
Target Start/End: Complemental strand, 48208516 - 48208462
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    |||||||||||  |||| ||||||||| |||  ||||||||||||||||||||||    
T  48208516 ttgaggcccatccttgagggaggcccaactcgtttgagctgtttgcaccccctca 48208462  T

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Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 91
Target Start/End: Original strand, 38209842 - 38209891
Alignment:
Q  42 tgaggcccatgattgaaggaggcccagctctgttgagctgtttgcacccc 91  Q
    ||||||||||  |||| |||||||||||||  ||||||||||||||||||    
T  38209842 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 38209891  T

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Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 59 - 107
Target Start/End: Complemental strand, 3850643 - 3850595
Alignment:
Q  59 ggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctg 107  Q
    ||||||||||||| ||  |||||||||||||||||||| ||||| ||||    
T  3850643 ggaggcccagctcagtatagctgtttgcaccccctcatggccggccctg 3850595  T

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Target: chr5 (Bit Score: 102; Significance: 2e-50; HSPs: 34)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 361 - 536
Target Start/End: Original strand, 37638340 - 37638514
Alignment:
Q  361 agattaattacaaacagttgtatctacatatttgnnnnnnnccctcatccaattaattcattcttcggcgatttgcggttgctctgttgattgttctttt 460  Q
    |||||||||||||||||||||| |||||||||||       ||||||||||||||||||||||||| |||||||||| | ||||||||| | ||||||||    
T  37638340 agattaattacaaacagttgtaactacatatttgaaaaga-ccctcatccaattaattcattcttctgcgatttgcgatggctctgttgttcgttctttt 37638438  T
Q  461 caatcttatgttaaacatacgttcaacatgtcttgcgaggcattggggttttccagtgaagaagaatacattatat 536  Q
    ||||||||||| ||||||| |||||||||||||||| || |||| |||||| ||||||||||||||||||||||||    
T  37638439 caatcttatgtcaaacatatgttcaacatgtcttgcaagccattcgggtttaccagtgaagaagaatacattatat 37638514  T

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Target: chr5; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 361 - 536
Target Start/End: Original strand, 37822498 - 37822672
Alignment:
Q  361 agattaattacaaacagttgtatctacatatttgnnnnnnnccctcatccaattaattcattcttcggcgatttgcggttgctctgttgattgttctttt 460  Q
    |||||||||||||||||||||| |||||||||||       ||||||||||||||||||||||||  |||||||||| | ||||||||| | ||||||||    
T  37822498 agattaattacaaacagttgtaactacatatttgaaaaga-ccctcatccaattaattcattcttatgcgatttgcgatggctctgttgttcgttctttt 37822596  T
Q  461 caatcttatgttaaacatacgttcaacatgtcttgcgaggcattggggttttccagtgaagaagaatacattatat 536  Q
    ||||||||||| ||||||| |||||||||||||||| || |||| |||||| ||||||||||||||||||||||||    
T  37822597 caatcttatgtcaaacatatgttcaacatgtcttgcaagccattcgggtttaccagtgaagaagaatacattatat 37822672  T

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Target: chr5; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 361 - 536
Target Start/End: Original strand, 37710101 - 37710275
Alignment:
Q  361 agattaattacaaacagttgtatctacatatttgnnnnnnnccctcatccaattaattcattcttcggcgatttgcggttgctctgttgattgttctttt 460  Q
    ||||||||||||||||||| ||||||||||||||       || |||||||||||||||||||||| |||||||||| | ||||||||| ||||||||||    
T  37710101 agattaattacaaacagttatatctacatatttgaaaaca-ccatcatccaattaattcattcttctgcgatttgcgatggctctgttgtttgttctttt 37710199  T
Q  461 caatcttatgttaaacatacgttcaacatgtcttgcgaggcattggggttttccagtgaagaagaatacattatat 536  Q
    ||||||||||| ||||||| |||||||||||||| | || |||| |||||| || |||||||||||||||||||||    
T  37710200 caatcttatgtcaaacatatgttcaacatgtcttacaagccattcgggtttaccggtgaagaagaatacattatat 37710275  T

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Target: chr5; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 402 - 536
Target Start/End: Complemental strand, 37394412 - 37394278
Alignment:
Q  402 ccctcatccaattaattcattcttcggcgatttgcggttgctctgttgattgttcttttcaatcttatgttaaacatacgttcaacatgtcttgcgaggc 501  Q
    |||||||| ||||||||||| ||||  ||||||  | | ||||| ||| ||| |||||||||||||||||||||||||  ||||||||||||||| || |    
T  37394412 ccctcatcaaattaattcatccttctacgatttaagttggctctattgtttgatcttttcaatcttatgttaaacatattttcaacatgtcttgcaagcc 37394313  T
Q  502 attggggttttccagtgaagaagaatacattatat 536  Q
    |||||||||||||||||||||||||||||||||||    
T  37394312 attggggttttccagtgaagaagaatacattatat 37394278  T

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Target: chr5; HSP #5
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 174 - 314
Target Start/End: Original strand, 37709922 - 37710056
Alignment:
Q  174 aagttgaagcaattaagtcttgatcatttattcaacnnnnnnntcttgaaagtaaccaaaaagcaattgatcactataaatttcttatttgttcaacaac 273  Q
    ||||||||||||||||||||| ||||||||||||||       ||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||    
T  37709922 aagttgaagcaattaagtctt-atcatttattcaacaataaaatcttgaaagtaacaaaaaagcaattgatcactttaa-tttcttatttgttcaacaac 37710019  T
Q  274 ttacaatatatagcacattggtattaaaagatatatatata 314  Q
    ||||||||     |||||||||||||||| |||||||||||    
T  37710020 ttacaataa----cacattggtattaaaatatatatatata 37710056  T

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Target: chr5; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 174 - 281
Target Start/End: Original strand, 37531424 - 37531529
Alignment:
Q  174 aagttgaagcaattaagtcttgatcatttattcaacnnnnnnntcttgaaagtaaccaaaaagcaattgatcactataaatttcttatttgttcaacaac 273  Q
    ||||||||||||||||||||| ||||||||||||||       ||||||||||||| ||||||||||| |||||| ||| ||||||||||||||||||||    
T  37531424 aagttgaagcaattaagtctt-atcatttattcaacaataaaatcttgaaagtaacaaaaaagcaattaatcactttaa-tttcttatttgttcaacaac 37531521  T
Q  274 ttacaata 281  Q
    ||||||||    
T  37531522 ttacaata 37531529  T

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Target: chr5; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 174 - 281
Target Start/End: Original strand, 37592631 - 37592736
Alignment:
Q  174 aagttgaagcaattaagtcttgatcatttattcaacnnnnnnntcttgaaagtaaccaaaaagcaattgatcactataaatttcttatttgttcaacaac 273  Q
    ||||||||||||||||||||| ||||||||||||||       ||||||||||||| ||||||||||| |||||| ||| ||||||||||||||||||||    
T  37592631 aagttgaagcaattaagtctt-atcatttattcaacaataaaatcttgaaagtaacaaaaaagcaattaatcactttaa-tttcttatttgttcaacaac 37592728  T
Q  274 ttacaata 281  Q
    ||||||||    
T  37592729 ttacaata 37592736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 174 - 281
Target Start/End: Original strand, 37694990 - 37695095
Alignment:
Q  174 aagttgaagcaattaagtcttgatcatttattcaacnnnnnnntcttgaaagtaaccaaaaagcaattgatcactataaatttcttatttgttcaacaac 273  Q
    ||||||||||||||||||||| ||||||||||||||       ||||||||||||| ||||||||||| |||||| ||| ||||||||||||||||||||    
T  37694990 aagttgaagcaattaagtctt-atcatttattcaacaataaaatcttgaaagtaacaaaaaagcaattaatcactttaa-tttcttatttgttcaacaac 37695087  T
Q  274 ttacaata 281  Q
    ||||||||    
T  37695088 ttacaata 37695095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 219 - 314
Target Start/End: Complemental strand, 37394576 - 37394481
Alignment:
Q  219 ttgaaagtaaccaaaaagcaattgatcactataaatttcttatttgttcaacaacttacaatatatagcacattggtattaaaagatatatatata 314  Q
    ||||||||| |  |||||||||||||||||||||||| ||||||| |||| ||||||  |||||||| |||| ||||| |||||||||||||||||    
T  37394576 ttgaaagtatcataaaagcaattgatcactataaattccttatttattcatcaacttgaaatatataacacactggtactaaaagatatatatata 37394481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 41 - 108
Target Start/End: Original strand, 38869593 - 38869660
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctga 108  Q
    ||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  38869593 ttgaggcccatgactgagggaggcccagctttgttgagctgtttgcaccccctcatggccgggcctga 38869660  T

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Target: chr5; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 16199026 - 16199080
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  16199026 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctca 16199080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 406 - 536
Target Start/End: Complemental strand, 37402520 - 37402390
Alignment:
Q  406 catccaattaattcattcttcggcgatttgcggttgctctgttgattgttcttttcaatcttatgttaaacatacgttcaacatgtcttgcgaggcattg 505  Q
    |||| |||||||||||||||| |||||||||      ||||||| |||||||||||| |||||||||||||||   |||||||  |||  | || |||||    
T  37402520 catcaaattaattcattcttctgcgatttgcacagtatctgttgtttgttcttttcagtcttatgttaaacatgttttcaacaattctaacaagccattg 37402421  T
Q  506 gggttttccagtgaagaagaatacattatat 536  Q
     ||||| ||||||||||||||||||||||||    
T  37402420 aggtttaccagtgaagaagaatacattatat 37402390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 406 - 536
Target Start/End: Original strand, 37531738 - 37531868
Alignment:
Q  406 catccaattaattcattcttcggcgatttgcggttgctctgttgattgttcttttcaatcttatgttaaacatacgttcaacatgtcttgcgaggcattg 505  Q
    |||| |||||||||||||||| |||||||||      ||||||| |||||||||||| |||||||||||||||   |||||||  |||  | || |||||    
T  37531738 catcaaattaattcattcttctgcgatttgcacagtatctgttgtttgttcttttcagtcttatgttaaacatgttttcaacaattctaacaagccattg 37531837  T
Q  506 gggttttccagtgaagaagaatacattatat 536  Q
     ||||| ||||||||||||||||||||||||    
T  37531838 aggtttaccagtgaagaagaatacattatat 37531868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 406 - 536
Target Start/End: Original strand, 37592842 - 37592972
Alignment:
Q  406 catccaattaattcattcttcggcgatttgcggttgctctgttgattgttcttttcaatcttatgttaaacatacgttcaacatgtcttgcgaggcattg 505  Q
    |||| |||||||||||||||| |||||||||      ||||||| |||||||||||| |||||||||||||||   |||||||  |||  | || |||||    
T  37592842 catcaaattaattcattcttctgcgatttgcacagtatctgttgtttgttcttttcagtcttatgttaaacatgttttcaacaattctaacaagccattg 37592941  T
Q  506 gggttttccagtgaagaagaatacattatat 536  Q
     ||||| ||||||||||||||||||||||||    
T  37592942 aggtttaccagtgaagaagaatacattatat 37592972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 406 - 536
Target Start/End: Original strand, 37695233 - 37695363
Alignment:
Q  406 catccaattaattcattcttcggcgatttgcggttgctctgttgattgttcttttcaatcttatgttaaacatacgttcaacatgtcttgcgaggcattg 505  Q
    |||| |||||||||||||||| |||||||||      ||||||| |||||||||||| |||||||||||||||   |||||||  |||  | || |||||    
T  37695233 catcaaattaattcattcttctgcgatttgcacagtatctgttgtttgttcttttcagtcttatgttaaacatgttttcaacaattctaacaagccattg 37695332  T
Q  506 gggttttccagtgaagaagaatacattatat 536  Q
     ||||| ||||||||||||||||||||||||    
T  37695333 aggtttaccagtgaagaagaatacattatat 37695363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 451 - 536
Target Start/End: Original strand, 37434393 - 37434478
Alignment:
Q  451 ttgttcttttcaatcttatgttaaacatacgttcaacatgtcttgcgaggcattggggttttccagtgaagaagaatacattatat 536  Q
    |||||||||||| ||||||||||||| || | |||||| ||||    || ||||||||||||||||||||||||||||||||||||    
T  37434393 ttgttcttttcattcttatgttaaacgtatgctcaacaagtctaagaagccattggggttttccagtgaagaagaatacattatat 37434478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 16799556 - 16799624
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctgat 109  Q
    ||||||||||||| ||| ||||||| |||||| |||||||||||||||||||||| ||||||| |||||    
T  16799556 ttgaggcccatgactgagggaggcctagctctattgagctgtttgcaccccctcaaagccggggctgat 16799624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 174 - 270
Target Start/End: Original strand, 37822032 - 37822126
Alignment:
Q  174 aagttgaagcaattaagtcttgatcatttattcaacnnnnnnntcttgaaagtaaccaaaaagcaattgatcactataaatttcttatttgttcaac 270  Q
    ||||||||||||||||||||| ||||||||||||||       || |||||||||| |||||||||||||||||| | |||||| ||||||||||||    
T  37822032 aagttgaagcaattaagtctt-atcatttattcaacgataaaatcctgaaagtaacaaaaaagcaattgatcact-ttaatttcatatttgttcaac 37822126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 41 - 95
Target Start/End: Complemental strand, 27923951 - 27923897
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    ||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||    
T  27923951 ttgaggcccatgactgagggaggtccagctctgttgagctgtttgcaccccctca 27923897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 41 - 88
Target Start/End: Complemental strand, 9364160 - 9364113
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcac 88  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  9364160 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcac 9364113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 238 - 308
Target Start/End: Complemental strand, 37402636 - 37402566
Alignment:
Q  238 aattgatcactataaatttcttatttgttcaacaacttacaatatatagcacattggtattaaaagatata 308  Q
    |||| |||||||||||||||||||||||| ||||||||  ||||||||  | | |||||||||||||||||    
T  37402636 aattcatcactataaatttcttatttgtttaacaacttgaaatatataataaactggtattaaaagatata 37402566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 41 - 107
Target Start/End: Original strand, 40389765 - 40389831
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctg 107  Q
    |||||| |||||| ||| |||||||||| ||||||||||||||||||||| ||||  ||||||||||    
T  40389765 ttgaggtccatgactgagggaggcccaggtctgttgagctgtttgcacccgctcagggccgggcctg 40389831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 15480229 - 15480283
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    |||||||||||  |||| |||||||||||||  ||||||||||||||||||||||    
T  15480229 ttgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 15480283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 95
Target Start/End: Complemental strand, 19523159 - 19523105
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    |||||||||||  |||| |||||||||||||  ||||||||||||||||||||||    
T  19523159 ttgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 19523105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 42 - 95
Target Start/End: Original strand, 34756615 - 34756668
Alignment:
Q  42 tgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    ||||||||||  |||| |||||||||||||  ||||||||||||||||||||||    
T  34756615 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 34756668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 91
Target Start/End: Complemental strand, 7670787 - 7670743
Alignment:
Q  47 cccatgattgaaggaggcccagctctgttgagctgtttgcacccc 91  Q
    ||||||| ||| ||||||||| |||||||||||||||||||||||    
T  7670787 cccatgactgagggaggcccaactctgttgagctgtttgcacccc 7670743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 28822576 - 28822620
Alignment:
Q  60 gaggcccagctctgttgagctgtttgcaccccctcatagccgggc 104  Q
    |||||||| ||||||||||||||||||||||||||| | ||||||    
T  28822576 gaggcccaactctgttgagctgtttgcaccccctcagaaccgggc 28822620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 93
Target Start/End: Complemental strand, 30853332 - 30853280
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccct 93  Q
    |||||| ||||  ||||||||||||||||||  ||||||||||||||||||||    
T  30853332 ttgaggtccatccttgaaggaggcccagctcgtttgagctgtttgcaccccct 30853280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 501 - 536
Target Start/End: Original strand, 37701422 - 37701457
Alignment:
Q  501 cattggggttttccagtgaagaagaatacattatat 536  Q
    ||||| ||||||||||||||||||||||||||||||    
T  37701422 cattgaggttttccagtgaagaagaatacattatat 37701457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 16592845 - 16592899
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    |||||||||||  || ||||||| |||||||  ||||||||||||||||||||||    
T  16592845 ttgaggcccatccttaaaggaggtccagctcgtttgagctgtttgcaccccctca 16592899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 31881590 - 31881644
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    |||||| ||||  |||| |||||||||||||  ||||||||||||||||||||||    
T  31881590 ttgaggtccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 31881644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 36188019 - 36188073
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    |||||||||||  |||| ||||||||| |||  ||||||||||||||||||||||    
T  36188019 ttgaggcccatccttgagggaggcccaactcgtttgagctgtttgcaccccctca 36188073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 281
Target Start/End: Original strand, 37531565 - 37531594
Alignment:
Q  252 aatttcttatttgttcaacaacttacaata 281  Q
    ||||||||||||||||||||||||||||||    
T  37531565 aatttcttatttgttcaacaacttacaata 37531594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 44 - 92
Target Start/End: Original strand, 22987470 - 22987518
Alignment:
Q  44 aggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccc 92  Q
    ||||||||  |||| |||||||||||||  |||||||||||||||||||    
T  22987470 aggcccatctttgagggaggcccagctcgtttgagctgtttgcaccccc 22987518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 6e-23; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 41 - 108
Target Start/End: Complemental strand, 44708348 - 44708281
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctga 108  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  44708348 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagagccgggcctga 44708281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 195 - 290
Target Start/End: Original strand, 14552511 - 14552606
Alignment:
Q  195 gatcatttattcaacnnnnnnntcttgaaagtaaccaaaaagcaattgatcactataaatttcttatttgttcaacaacttacaatatatagcaca 290  Q
    |||||||||||||||       |||||| |||||| |||||||||||||||||||||||||||||||||  |||||||||| ||||||||||||||    
T  14552511 gatcatttattcaacaacaaagtcttgatagtaacaaaaaagcaattgatcactataaatttcttattttatcaacaacttccaatatatagcaca 14552606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 44 - 107
Target Start/End: Complemental strand, 48157005 - 48156942
Alignment:
Q  44 aggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctg 107  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||    
T  48157005 aggcccatgattgagggaggcccagctctgttgagctgtttgcaccccctcagggccgggcctg 48156942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 41 - 112
Target Start/End: Original strand, 53507117 - 53507188
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctgattct 112  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||  |||||||||| ||||    
T  53507117 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggccgggcctgcttct 53507188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 41 - 110
Target Start/End: Original strand, 43207474 - 43207543
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctgatt 110  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||   ||||||||||||    
T  43207474 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcaggaccgggcctgatt 43207543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 41 - 108
Target Start/End: Original strand, 9878919 - 9878986
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctga 108  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||||||||  ||||| |||||    
T  9878919 ttgaggcccatgattaagggaggcccagctctgttgagctgtttgcaccccctcagggccggacctga 9878986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 50939468 - 50939522
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||    
T  50939468 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacctcctca 50939522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 34290874 - 34290928
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    ||||||||||||  ||| ||||||||| |||||||||||||||||||||||||||    
T  34290874 ttgaggcccatgcctgagggaggcccaactctgttgagctgtttgcaccccctca 34290928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 54407391 - 54407445
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    ||||||||||||| ||| ||||||||| ||||||||||||||||||||| |||||    
T  54407391 ttgaggcccatgactgagggaggcccaactctgttgagctgtttgcacctcctca 54407445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 50258734 - 50258788
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    |||||||||||  |||| |||||||||||||  ||||||||||||||||||||||    
T  50258734 ttgaggcccatccttgagggaggcccagctcatttgagctgtttgcaccccctca 50258788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 42 - 95
Target Start/End: Original strand, 27078819 - 27078872
Alignment:
Q  42 tgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    ||||||||||  |||| |||||||||||||  ||||||||||||||||||||||    
T  27078819 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 27078872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 42 - 95
Target Start/End: Original strand, 27084616 - 27084669
Alignment:
Q  42 tgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    ||||||||||  |||| |||||||||||||  ||||||||||||||||||||||    
T  27084616 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 27084669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 42 - 95
Target Start/End: Original strand, 36716276 - 36716329
Alignment:
Q  42 tgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    ||||||||||  |||| |||||||||||||  ||||||||||||||||||||||    
T  36716276 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 36716329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 42 - 95
Target Start/End: Original strand, 38681348 - 38681401
Alignment:
Q  42 tgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    ||||||||||  |||| |||||||||||||  ||||||||||||||||||||||    
T  38681348 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 38681401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 41 - 90
Target Start/End: Original strand, 48720530 - 48720579
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccc 90  Q
    ||||||||||||| ||| ||| || |||||||||||||||||||||||||    
T  48720530 ttgaggcccatgactgagggaagctcagctctgttgagctgtttgcaccc 48720579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 42 - 95
Target Start/End: Original strand, 54619454 - 54619507
Alignment:
Q  42 tgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    ||||||||||  |||| |||||||||||||  ||||||||||||||||||||||    
T  54619454 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 54619507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 3954852 - 3954906
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    |||||| ||||  |||| |||||||||||||  ||||||||||||||||||||||    
T  3954852 ttgaggtccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 3954906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 41 - 95
Target Start/End: Complemental strand, 13795253 - 13795199
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    |||||||||||  |||| |||||||||||||  ||||||||||||||| ||||||    
T  13795253 ttgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacgccctca 13795199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 110
Target Start/End: Complemental strand, 11467803 - 11467754
Alignment:
Q  61 aggcccagctctgttgagctgtttgcaccccctcatagccgggcctgatt 110  Q
    ||||||||||| || ||||||||||||||||||||| ||| | |||||||    
T  11467803 aggcccagctcagtagagctgtttgcaccccctcatggccagccctgatt 11467754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 96
Target Start/End: Original strand, 25373642 - 25373679
Alignment:
Q  59 ggaggcccagctctgttgagctgtttgcaccccctcat 96  Q
    ||||||||||||| || |||||||||||||||||||||    
T  25373642 ggaggcccagctcagtagagctgtttgcaccccctcat 25373679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 91
Target Start/End: Complemental strand, 36605911 - 36605862
Alignment:
Q  42 tgaggcccatgattgaaggaggcccagctctgttgagctgtttgcacccc 91  Q
    ||||||||||  |||| |||||||||||||  ||||||||||||||||||    
T  36605911 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 36605862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 41 - 93
Target Start/End: Original strand, 53149457 - 53149509
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccct 93  Q
    |||||||||||  |||  |||||||||||||  ||||||||||||||||||||    
T  53149457 ttgaggcccatccttggtggaggcccagctcgtttgagctgtttgcaccccct 53149509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 9e-22; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 41 - 110
Target Start/End: Complemental strand, 17353825 - 17353756
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctgatt 110  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  17353825 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggccgggcctgatt 17353756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 20711952 - 20712020
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctgat 109  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||  ||||||||||||    
T  20711952 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcacctcctcagggccgggcctgat 20712020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 41 - 108
Target Start/End: Complemental strand, 28075654 - 28075587
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctga 108  Q
    |||| |||||||| ||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||    
T  28075654 ttgaagcccatgactgaaggaagcctagctctgttgagctgtttgcaccccctcagagccgggcctga 28075587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 41 - 107
Target Start/End: Complemental strand, 19987032 - 19986966
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctg 107  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |  ||||||||||    
T  19987032 ttgaggcccataattgagggaggcccagctctgttgagctgtttgcacccccttagggccgggcctg 19986966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 27788922 - 27788976
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  27788922 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctca 27788976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 235466 - 235528
Alignment:
Q  48 ccatgattgaaggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctgatt 110  Q
    |||||| ||| ||||||||||||||||| |||||||||||||||||||  | |||||||||||    
T  235466 ccatgactgagggaggcccagctctgttaagctgtttgcaccccctcagggacgggcctgatt 235528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 23070889 - 23070943
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    |||||||||||  |||| |||||||||||||  ||||||||||||||||||||||    
T  23070889 ttgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 23070943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 42 - 95
Target Start/End: Original strand, 13727650 - 13727703
Alignment:
Q  42 tgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    ||||||||||  |||| |||||||||||||  ||||||||||||||||||||||    
T  13727650 tgaggcccatctttgagggaggcccagctcgtttgagctgtttgcaccccctca 13727703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 12083640 - 12083694
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    |||||||||||  |||| | |||||||||||  ||||||||||||||||||||||    
T  12083640 ttgaggcccatccttgaggaaggcccagctcgtttgagctgtttgcaccccctca 12083694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 19741223 - 19741277
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    |||||| ||||  |||| |||||||||||||  ||||||||||||||||||||||    
T  19741223 ttgaggtccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 19741277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 41 - 91
Target Start/End: Original strand, 30832667 - 30832717
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcacccc 91  Q
    |||||||||||  |||| |||||||||||||  ||||||||||||||||||    
T  30832667 ttgaggcccatccttgagggaggcccagctcatttgagctgtttgcacccc 30832717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 95
Target Start/End: Complemental strand, 21280386 - 21280345
Alignment:
Q  54 ttgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    |||| |||||||||||||  ||||||||||||||||||||||    
T  21280386 ttgagggaggcccagctcgtttgagctgtttgcaccccctca 21280345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 95
Target Start/End: Complemental strand, 21479349 - 21479296
Alignment:
Q  42 tgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    ||||||||||  |||| |||||||||||||  || |||||||||||||||||||    
T  21479349 tgaggcccatccttgagggaggcccagctcgttttagctgtttgcaccccctca 21479296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 95
Target Start/End: Original strand, 27314777 - 27314818
Alignment:
Q  54 ttgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    |||| |||||||||||||  ||||||||||||||||||||||    
T  27314777 ttgagggaggcccagctcgtttgagctgtttgcaccccctca 27314818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 6e-20; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 41 - 107
Target Start/End: Original strand, 47985202 - 47985268
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctg 107  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||  ||||||||||    
T  47985202 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggccgggcctg 47985268  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 41 - 108
Target Start/End: Original strand, 38415108 - 38415175
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctga 108  Q
    ||||||||||||| | | ||||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  38415108 ttgaggcccatgactaagggaggcccagctctgttgagctgtttgcatcccctcagagccgggcctga 38415175  T

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Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 48984077 - 48984131
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  48984077 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctca 48984131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 24525918 - 24525972
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    ||||||||||||| | | |||||||||||||||||||||||||||||||||||||    
T  24525918 ttgaggcccatgactaagggaggcccagctctgttgagctgtttgcaccccctca 24525972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 41 - 106
Target Start/End: Complemental strand, 25010319 - 25010254
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctcatagccgggcct 106  Q
    ||||||||||||| ||| ||||||||| ||||||||||||||||| |||||||||  |||||||||    
T  25010319 ttgaggcccatgactgagggaggcccaactctgttgagctgtttgtaccccctcagggccgggcct 25010254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 41 - 108
Target Start/End: Complemental strand, 19691964 - 19691896
Alignment:
Q  41 ttgaggcccat-gattgaaggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctga 108  Q
    ||||||||||| || ||| |||||||||||||||||||||||||||||||||||||  | |||||||||    
T  19691964 ttgaggcccattgactgagggaggcccagctctgttgagctgtttgcaccccctcagggtcgggcctga 19691896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 41 - 92
Target Start/End: Original strand, 20091514 - 20091565
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccc 92  Q
    ||||||||||||| ||| |||||||||||||| |||||||||||||||||||    
T  20091514 ttgaggcccatgactgagggaggcccagctctattgagctgtttgcaccccc 20091565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 23551305 - 23551359
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    ||||||||||||||||| ||||| ||| |||| ||||||||||||||||||||||    
T  23551305 ttgaggcccatgattgagggaggtccaactctattgagctgtttgcaccccctca 23551359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 95
Target Start/End: Complemental strand, 28749647 - 28749593
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    |||||||||||  |||| |||||||||||||  ||||||||||||||||||||||    
T  28749647 ttgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 28749593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 108
Target Start/End: Original strand, 10329643 - 10329710
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctga 108  Q
    ||||||||||||| ||| |||| || ||| ||||||| |||||||||||||||||   ||||||||||    
T  10329643 ttgaggcccatgactgagggagacctagcgctgttgaactgtttgcaccccctcaggaccgggcctga 10329710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 12596429 - 12596483
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    |||||| ||||  |||| |||||||||||||  ||||||||||||||||||||||    
T  12596429 ttgagggccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 12596483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 59 - 109
Target Start/End: Complemental strand, 26253117 - 26253067
Alignment:
Q  59 ggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctgat 109  Q
    ||||||||||||| |  |||||||||||||||||||| |||||| ||||||    
T  26253117 ggaggcccagctcagaagagctgtttgcaccccctcaaagccggccctgat 26253067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 95
Target Start/End: Original strand, 18777019 - 18777072
Alignment:
Q  42 tgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    ||||||||||  |||| |||||||||||||  |||||||||||||||| |||||    
T  18777019 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacctcctca 18777072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 63 - 107
Target Start/End: Complemental strand, 223596 - 223552
Alignment:
Q  63 gcccagctctgttgagctgtttgcaccccctcatagccgggcctg 107  Q
    ||||||||| || ||||||||||||||||||||| ||||| ||||    
T  223596 gcccagctcagtagagctgtttgcaccccctcattgccggccctg 223552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 6e-20; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 41 - 107
Target Start/End: Complemental strand, 26715997 - 26715931
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctg 107  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||  ||||||||||    
T  26715997 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggccgggcctg 26715931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 41 - 95
Target Start/End: Complemental strand, 9045898 - 9045844
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  9045898 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctca 9045844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 27506975 - 27507029
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  27506975 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctca 27507029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 41 - 93
Target Start/End: Complemental strand, 24410302 - 24410250
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccct 93  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  24410302 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccct 24410250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 10762799 - 10762853
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||    
T  10762799 ttgaggcccatgattgagggaagcccagctctgttgagctgtttgcatcccctca 10762853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 42 - 95
Target Start/End: Complemental strand, 4505744 - 4505691
Alignment:
Q  42 tgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    |||||||||| ||||| |||||||||||||  ||||||||||||||||||||||    
T  4505744 tgaggcccatcattgagggaggcccagctcgtttgagctgtttgcaccccctca 4505691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 41 - 86
Target Start/End: Complemental strand, 8327533 - 8327488
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgc 86  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||    
T  8327533 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgc 8327488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 95
Target Start/End: Complemental strand, 3952965 - 3952911
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    |||||||||||  |||| |||||||||||||  ||||||||||||||||||||||    
T  3952965 ttgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 3952911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 42 - 95
Target Start/End: Complemental strand, 3155068 - 3155015
Alignment:
Q  42 tgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    ||||||||||  |||| |||||||||||||  ||||||||||||||||||||||    
T  3155068 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 3155015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 42 - 95
Target Start/End: Complemental strand, 6964857 - 6964804
Alignment:
Q  42 tgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    ||||||||||  |||| |||||||||||||  ||||||||||||||||||||||    
T  6964857 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 6964804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 41 - 95
Target Start/End: Complemental strand, 7162743 - 7162689
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    |||||||||||  |||  |||||||||||||  ||||||||||||||||||||||    
T  7162743 ttgaggcccatccttgtgggaggcccagctcgtttgagctgtttgcaccccctca 7162689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 12337689 - 12337743
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    |||||||||||  |||| |||||| ||||||  ||||||||||||||||||||||    
T  12337689 ttgaggcccatccttgagggaggctcagctcgtttgagctgtttgcaccccctca 12337743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 95
Target Start/End: Complemental strand, 34693212 - 34693159
Alignment:
Q  42 tgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    ||||||||||  |||| ||||||||| |||  ||||||||||||||||||||||    
T  34693212 tgaggcccatccttgagggaggcccaactcgtttgagctgtttgcaccccctca 34693159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 95
Target Start/End: Complemental strand, 34715624 - 34715571
Alignment:
Q  42 tgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    ||||||||||  |||| ||||||||| |||  ||||||||||||||||||||||    
T  34715624 tgaggcccatccttgagggaggcccaactcgtttgagctgtttgcaccccctca 34715571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 9e-19; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 42600650 - 42600582
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctgat 109  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||  | ||||||||||    
T  42600650 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggacgggcctgat 42600582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 45 - 95
Target Start/End: Complemental strand, 10917256 - 10917206
Alignment:
Q  45 ggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  10917256 ggcccatgagtgagggaggcccagctctgttgagctgtttgcaccccctca 10917206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 23606855 - 23606909
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    ||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||    
T  23606855 ttgaggcccatgactgagggaggcccaactctgttgagctgtttgcaccccctca 23606909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 41 - 110
Target Start/End: Original strand, 23798495 - 23798564
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctgatt 110  Q
    ||||||||||||| ||| |||||||||||| |||||||||||| |||||||||||  ||| |||||||||    
T  23798495 ttgaggcccatgactgagggaggcccagctttgttgagctgttcgcaccccctcaaggccaggcctgatt 23798564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 20003876 - 20003930
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    |||||||||||  |||| |||||||||||||  ||||||||||||||||||||||    
T  20003876 ttgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 20003930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 42 - 95
Target Start/End: Original strand, 2952473 - 2952526
Alignment:
Q  42 tgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    ||||||||||  |||| |||||||||||||  ||||||||||||||||||||||    
T  2952473 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 2952526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 42 - 95
Target Start/End: Original strand, 3048774 - 3048827
Alignment:
Q  42 tgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    ||||||||||  |||| |||||||||||||  ||||||||||||||||||||||    
T  3048774 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 3048827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 42 - 95
Target Start/End: Original strand, 5860996 - 5861049
Alignment:
Q  42 tgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    ||||||||||  |||| |||||||||||||  ||||||||||||||||||||||    
T  5860996 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 5861049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 59 - 109
Target Start/End: Original strand, 45193876 - 45193926
Alignment:
Q  59 ggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctgat 109  Q
    |||||||||||||||| |||||||||||||| || || |||||| ||||||    
T  45193876 ggaggcccagctctgtagagctgtttgcacctccccagagccggccctgat 45193926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 41 - 95
Target Start/End: Complemental strand, 45472257 - 45472203
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    |||||||||||  |||  || |||||||||| |||||||||||||||||||||||    
T  45472257 ttgaggcccatccttgggggtggcccagctcggttgagctgtttgcaccccctca 45472203  T

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Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 95
Target Start/End: Complemental strand, 30883175 - 30883122
Alignment:
Q  42 tgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    ||||||||||  |||| |||||||||||||  ||||||||||||||||| ||||    
T  30883175 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccactca 30883122  T

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Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 58 - 102
Target Start/End: Original strand, 4322502 - 4322546
Alignment:
Q  58 aggaggcccagctctgttgagctgtttgcaccccctcatagccgg 102  Q
    ||||||||||||||  | ||||||||||||||||||||| |||||    
T  4322502 aggaggcccagctcaatagagctgtttgcaccccctcatggccgg 4322546  T

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Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 41 - 108
Target Start/End: Original strand, 9173255 - 9173322
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctga 108  Q
    ||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||  |||||||||||    
T  9173255 ttgaggcccatgactgagggaggcccaactctgttgagctgtttgcaccccctcagggccgggcctga 9173322  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 41 - 108
Target Start/End: Complemental strand, 27559513 - 27559446
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctga 108  Q
    ||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||| | ||||||||||    
T  27559513 ttgaggcccatgactgagggaggtccagctctgttgagctgtttgcaccccctcaaaaccgggcctga 27559446  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 1367111 - 1367165
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  1367111 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctca 1367165  T

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Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 13913716 - 13913770
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  13913716 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctca 13913770  T

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Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 40502024 - 40502078
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  40502024 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctca 40502078  T

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Target: chr1; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 45 - 108
Target Start/End: Complemental strand, 44895529 - 44895466
Alignment:
Q  45 ggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctga 108  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||||||||  |||| ||||||    
T  44895529 ggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggccgagcctga 44895466  T

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Target: chr1; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 42 - 109
Target Start/End: Original strand, 51607674 - 51607741
Alignment:
Q  42 tgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctgat 109  Q
    |||||||||||||||| | |||||||||||| |||||||||||||||| ||||||  |||||||||||    
T  51607674 tgaggcccatgattgaggaaggcccagctctattgagctgtttgcaccacctcatgaccgggcctgat 51607741  T

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Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 41 - 91
Target Start/End: Complemental strand, 19955597 - 19955547
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcacccc 91  Q
    ||||||||||||| ||| ||||| |||||||||||||||||||||||||||    
T  19955597 ttgaggcccatgactgagggaggtccagctctgttgagctgtttgcacccc 19955547  T

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Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 95
Target Start/End: Complemental strand, 14146271 - 14146217
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    |||||||||||  |||| |||||||||||||  ||||||||||||||||||||||    
T  14146271 ttgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 14146217  T

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Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 95
Target Start/End: Complemental strand, 17168835 - 17168781
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    ||||||||||||| ||| ||||||| |||||| |||||||||||||| |||||||    
T  17168835 ttgaggcccatgactgagggaggccaagctctattgagctgtttgcatcccctca 17168781  T

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Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 95
Target Start/End: Complemental strand, 23181777 - 23181723
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    ||||||||||| ||||  || |||||||||| |||||||||||||||||||||||    
T  23181777 ttgaggcccatcattgggggtggcccagctcggttgagctgtttgcaccccctca 23181723  T

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Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 42 - 95
Target Start/End: Original strand, 27906949 - 27907002
Alignment:
Q  42 tgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    ||||||||||  |||| |||||||||||||  ||||||||||||||||||||||    
T  27906949 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 27907002  T

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Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 42 - 95
Target Start/End: Complemental strand, 44655604 - 44655551
Alignment:
Q  42 tgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    ||||||||||  |||| |||||||||||||  ||||||||||||||||||||||    
T  44655604 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 44655551  T

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Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 59 - 95
Target Start/End: Original strand, 5027992 - 5028028
Alignment:
Q  59 ggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    ||||||||||||| |||||||||||||||||||||||    
T  5027992 ggaggcccagctcggttgagctgtttgcaccccctca 5028028  T

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Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 41 - 95
Target Start/End: Complemental strand, 3406389 - 3406335
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    |||||||||||  |||  |||||||||||||  ||||||||||||||||||||||    
T  3406389 ttgaggcccatccttgggggaggcccagctcgtttgagctgtttgcaccccctca 3406335  T

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Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 3440431 - 3440485
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    |||||||||||  |||  |||||||||||||  ||||||||||||||||||||||    
T  3440431 ttgaggcccatccttgggggaggcccagctcgtttgagctgtttgcaccccctca 3440485  T

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Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 41 - 95
Target Start/End: Complemental strand, 6771762 - 6771708
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    |||||||||||  || | |||||||||||||  ||||||||||||||||||||||    
T  6771762 ttgaggcccatccttaagggaggcccagctcgtttgagctgtttgcaccccctca 6771708  T

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Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 41 - 95
Target Start/End: Complemental strand, 6888535 - 6888481
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    |||||||||||  |||| ||||||||| |||  ||||||||||||||||||||||    
T  6888535 ttgaggcccatccttgagggaggcccaactcgtttgagctgtttgcaccccctca 6888481  T

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Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 10912094 - 10912148
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    |||||||||||  ||| ||||||||||||||  |||||||||| |||||||||||    
T  10912094 ttgaggcccatccttggaggaggcccagctcgtttgagctgttcgcaccccctca 10912148  T

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Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 59 - 109
Target Start/End: Complemental strand, 12037637 - 12037587
Alignment:
Q  59 ggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctgat 109  Q
    ||||||||||||| || |||||||||||||||||||| || ||| ||||||    
T  12037637 ggaggcccagctcagtagagctgtttgcaccccctcaaagacggccctgat 12037587  T

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Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 41697279 - 41697333
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    |||| ||||||  |||| |||||||||||||  ||||||||||||||||||||||    
T  41697279 ttgatgcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 41697333  T

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Target: scaffold0039 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 41 - 107
Target Start/End: Complemental strand, 106445 - 106379
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctg 107  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||  ||||||||||    
T  106445 ttgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccctctcagggccgggcctg 106379  T

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Target: scaffold0027 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 4215 - 4147
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctgat 109  Q
    ||||||||||||| || ||||||||||||||||||||||||||||||||| ||||  ||||| ||||||    
T  4215 ttgaggcccatgactggaggaggcccagctctgttgagctgtttgcaccctctcagggccggccctgat 4147  T

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Target: scaffold0070 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 41 - 95
Target Start/End: Complemental strand, 1077 - 1023
Alignment:
Q  41 ttgaggcccatgattgaaggaggcccagctctgttgagctgtttgcaccccctca 95  Q
    |||||| ||||  |||| |||||||||||||  ||||||||||||||||||||||    
T  1077 ttgaggtccatccttgagggaggcccagctcgtttgagctgtttgcaccccctca 1023  T

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