View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13984_low_9 (Length: 520)
Name: NF13984_low_9
Description: NF13984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13984_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 11 - 501
Target Start/End: Complemental strand, 12454394 - 12453907
Alignment:
| Q |
11 |
acatcatcacatcaagaatcaaacataacatacaaattgtannnnnnnncttcctgatataaacttacattacattattacaaatatatatgaaaaattc |
110 |
Q |
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| T |
12454394 |
acatcatcacatcaagaatcaaacataacatacaaattgtattttt---cttcctgatataaacttacattacattattacaaatatatatgaaaaattc |
12454298 |
T |
|
| Q |
111 |
ttactcagcttcttcaacagcagcttcaattcgaagaagaacaaatccaacagcaacaccaacaagagtaagtccattcataatagctgcaatctgaaaa |
210 |
Q |
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| T |
12454297 |
ttactcagcttcttcaacagcagcttcaattcgaagaagaacaaatccaacagcaacaccaacaagagtaagtccattcataatagctgcaatctgaaaa |
12454198 |
T |
|
| Q |
211 |
atctcacctgcagcattacatgttgaagaacctgcacctcctcttcttcctccatttgatggatatttcaatgaactcgtcacttttgcaaaagcttgtt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
12454197 |
atctcacctgcagcattacatgttgaagaacctgcacctcctcttcttcctccatttgatggatatttcaatgaactcatcacttttgcaaaagcttgtt |
12454098 |
T |
|
| Q |
311 |
cagtgcacataggaactcctagtgatgtcacagtgctgttctgtgctttcaatccattgtatgaattcagtcctgtgataaacttcacattgttaccctt |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
12454097 |
cagtgcacataggaactcctagtgatgtcacagtgctgttctgtgctttcaatccattgtatgaattcagtcctgtgataaacttgacattgttaccctt |
12453998 |
T |
|
| Q |
411 |
cttagtactccttgatttggttccaataactgagcttcctacaacagtgattgtagatggagttgttgctgaggctgtagccatttttatt |
501 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
12453997 |
cttagtactccttgatttggttccaataactgagcttcctacaacagtgattgtagatggagttgttgctgaggctgtagccattgttatt |
12453907 |
T |
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