View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13985_high_1 (Length: 814)
Name: NF13985_high_1
Description: NF13985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13985_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 727; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 727; E-Value: 0
Query Start/End: Original strand, 1 - 798
Target Start/End: Original strand, 13160086 - 13160883
Alignment:
| Q |
1 |
ctttataccattttgatgttaaaagnnnnnnnnctattgatatgatcatatacnnnnnnnnnaagaaattacgatcatatacttaattaactgtttttta |
100 |
Q |
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|||||||||||||||||| |||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
13160086 |
ctttataccattttgatgataaaagaaaaaaaactattgatatgatcatatgctttttttttaagaaattacgatcatatacttaattaactgtttttta |
13160185 |
T |
|
| Q |
101 |
tcgtatcagatgctcaaataggaatctgttatggtatgatgggaaacaatctaccaccggcaaacgaggttataaatctctacaaagcaaacaacattaa |
200 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13160186 |
tcgtatcagatgctcaaataggaatatgttatggtatgatgggaaacaatctaccaccggcaaacgaggttataaatctctacaaagcaaacaacattaa |
13160285 |
T |
|
| Q |
201 |
gagaatgagactctacgatcctaatcaagctgctcttaatgcattaagaaattcaggcattgaactcattcttggtgtgccaaattccgaccttcaaacc |
300 |
Q |
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| T |
13160286 |
gagaatgagactctacgatcctaatcaagctgctctaaatgcattaagaaattcaggcattgaactcattcttggtgtgccaaattccgaccttcaaacc |
13160385 |
T |
|
| Q |
301 |
ctagccaccaactccgataatgcacgtcaatgggtacaaagaaatgtattgaacttctggcctagtgtcaaaattaagtatattgcagttggtaatgaag |
400 |
Q |
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| T |
13160386 |
ctagccaccaactccgataatgcacgtcaatgggtacaaagaaatgtattgaacttctggcctagtgtcaaaatcaagtatattgcagttggtaatgaag |
13160485 |
T |
|
| Q |
401 |
tgagtccagttggaggctcttcttggctagcccaatatgttctacctgccacccaaaatatatatcaagcgataagagctcaaggtcttcatgatcaaat |
500 |
Q |
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| T |
13160486 |
tgagtccagttggaggctcttcttggctagcccaatatgttctacctgccacccaaaatatatatcaagcgataagagctcaaggtcttcatgatcaaat |
13160585 |
T |
|
| Q |
501 |
caaggtttcaaccgctattgacatgacccttattggaaattcattccctccatctaaaggttcttttagaaatgatgttaggtcatacctagatcctttc |
600 |
Q |
| |
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| T |
13160586 |
caaggtttcaaccgctattgacatgacccttattggaaattcattccctccatctaaaggttcttttagaaatgatgttaggtcatacctagatcctttc |
13160685 |
T |
|
| Q |
601 |
attggatacttggtatatgcaggtgcacctttacttgtcaatgtttacccttattttagccatgttggtaacccgcgcgatatatctcttccttatgctc |
700 |
Q |
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| T |
13160686 |
attggatacttggtatatgcaggtgcacctttacttgtcaatgtttacccttattttagccatgttggtaacccgcgcgatatatctcttccttatgctc |
13160785 |
T |
|
| Q |
701 |
ttttcacttcaccgggtgttatggtacaagatggtccaaatgggtaccaaaacttgtttgatgctatgttggattcggtgcatgcagccctagataac |
798 |
Q |
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| T |
13160786 |
ttttcacttcaccgggtgttatggtacaagatggtccaaatgggtaccaaaacttgtttgatgctatgttggattcggtgcatgcagccctagataac |
13160883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 183 - 660
Target Start/End: Complemental strand, 13152970 - 13152493
Alignment:
| Q |
183 |
caaagcaaacaacattaagagaatgagactctacgatcctaatcaagctgctcttaatgcattaagaaattcaggcattgaactcattcttggtgtgcca |
282 |
Q |
| |
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|||| |||||||||| || |||||||| || || ||||| || |||||||||||| | ||| | |||||||| |||||||| || || | ||||||||| |
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| T |
13152970 |
caaatcaaacaacatcaaaagaatgaggctatatgatccaaaccaagctgctcttgaagcacttagaaattctggcattgagcttatgttaggtgtgcca |
13152871 |
T |
|
| Q |
283 |
aattccgaccttcaaaccctagccaccaactccgataatgcacgtcaatgggtacaaagaaatgtattgaacttctggcctagtgtcaaaattaagtata |
382 |
Q |
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| T |
13152870 |
aattctgatcttcaaaacattgctaccaacaatgacattgcaattcaatgggtacaaaaaaatgtactaaacttctaccctagtgtcaaaatcaaataca |
13152771 |
T |
|
| Q |
383 |
ttgcagttggtaatgaagtgagtccagttggaggctcttcttggctagcccaatatgttctacctgccacccaaaatatatatcaagcgataagagctca |
482 |
Q |
| |
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| T |
13152770 |
tcgcggttggtaatgaagttaacccagttggtggctcttctcaattcgcaaaatttgttcttccggcaatccaaaacatatatcaagcaataagagcgaa |
13152671 |
T |
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| Q |
483 |
aggtcttcatgatcaaatcaaggtttcaaccgctattgacatgacccttattggaaattcattccctccatctaaaggttcttttagaaatgatgttagg |
582 |
Q |
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| T |
13152670 |
aaatctgcacgatcaaatcaaggtttcaacggctattgacatgaccatgataggaacttcgtacccgccgtctaaaggttcatttagaagcgatgtgagg |
13152571 |
T |
|
| Q |
583 |
tcatacctagatcctttcattggatacttggtatatgcaggtgcacctttacttgtcaatgtttacccttattttagc |
660 |
Q |
| |
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| T |
13152570 |
tcatatttggatccaattataggctacttagtatatgcaaatgcacctttatttgcaaatatttactcttattttagc |
13152493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 327 - 660
Target Start/End: Complemental strand, 13146062 - 13145729
Alignment:
| Q |
327 |
tcaatgggtacaaagaaatgtattgaacttctggcctagtgtcaaaattaagtatattgcagttggtaatgaagtgagtccagttggaggctcttcttgg |
426 |
Q |
| |
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|||||||||||||| ||||||| | ||||||| |||||||| ||||| || || || || || ||||||||||| | ||||||||| ||||||||| |
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| T |
13146062 |
tcaatgggtacaaaaaaatgtactaaacttctaccctagtgttaaaatcaaatacatcgcggtcggtaatgaagttaatccagttggcggctcttctcaa |
13145963 |
T |
|
| Q |
427 |
ctagcccaatatgttctacctgccacccaaaatatatatcaagcgataagagctcaaggtcttcatgatcaaatcaaggtttcaaccgctattgacatga |
526 |
Q |
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| T |
13145962 |
tttgcaaaattcgtccttccggcaatccaaaacatataccaagcaataagagcgaaaaattttcaagatcaaatcaaggtttcaacggctattgacatga |
13145863 |
T |
|
| Q |
527 |
cccttattggaaattcattccctccatctaaaggttcttttagaaatgatgttaggtcatacctagatcctttcattggatacttggtatatgcaggtgc |
626 |
Q |
| |
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|| | || |||| ||| | ||| || ||||||||||| ||||||| ||||| |||||||| | ||||| | || || ||||| ||||||||| ||| |
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| T |
13145862 |
ccatgataggaacttcgtacccgccgtctaaaggttcatttagaagcgatgtgaggtcatatttggatccaattataggctacttagtatatgcaaatgc |
13145763 |
T |
|
| Q |
627 |
acctttacttgtcaatgtttacccttattttagc |
660 |
Q |
| |
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||||||| ||| ||| ||||| ||||||||||| |
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| T |
13145762 |
acctttatttgcaaatatttactcttattttagc |
13145729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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