View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13985_high_20 (Length: 350)
Name: NF13985_high_20
Description: NF13985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13985_high_20 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-169; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 25 - 340
Target Start/End: Complemental strand, 2789629 - 2789314
Alignment:
| Q |
25 |
cttcattcattattggaaggtgaatataaacttcatattcaggatagcttcattggcagtattgccaattatacacacagaggcacttgcttcataaata |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
2789629 |
cttcattcattattggaaggtgaatataaacttcatattcaggatagcttcattggcagtattgccaattatacacacagaagcacttgcttcataaata |
2789530 |
T |
|
| Q |
125 |
aattatatgcaaagttaattattcaccgatcacaggttatacaagacaacatcttgtgaaagaaattttcggaattgcgacgtgtactgcatgtattggc |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2789529 |
aattatatgcaaagttaattattcaccgatcacaggttatacaagacaacatcttgtgaaagaaattttcggaattgcgacgtgtactgcatgtattggc |
2789430 |
T |
|
| Q |
225 |
acaatcaacaatatcacatccatcagcgccattttgctttgctttctcacactcattcaagaatgtattgaatgcatcctcgacatatttaactgcgtcc |
324 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
2789429 |
acaatcaacaatatcacatccatcagctccattttgctttgctttctcacactcattcaagaatgtattgaatgcaacctcgacatatttaactgcgtcc |
2789330 |
T |
|
| Q |
325 |
aaaacacacaggttct |
340 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
2789329 |
aaaacacacatgttct |
2789314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 25 - 340
Target Start/End: Complemental strand, 2830884 - 2830568
Alignment:
| Q |
25 |
cttcattcattattggaaggtgaatataaactt-catattcaggatagcttcattggcagtattgccaattatacacacagaggcacttgcttcataaat |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | ||||||||||||| |||| | || ||||| |||||||||||||||| ||||||| ||||||||| |
|
|
| T |
2830884 |
cttcattcattattggaaggtgaatataaactttcttattcaggatagcctcatcgacaatattggcaattatacacacagaagcacttgtttcataaat |
2830785 |
T |
|
| Q |
124 |
aaattatatgcaaagttaattattcaccgatcacaggttatacaagacaacatcttgtgaaagaaattttcggaattgcgacgtgtactgcatgtattgg |
223 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| | || ||||||||||||| | |
|
|
| T |
2830784 |
aaattatgtgcaaagttaactattcaccgatcacgtgttatacaagacaacatcttgtgaaagaaatttttggaattgggtagtttactgcatgtattag |
2830685 |
T |
|
| Q |
224 |
cacaatcaacaatatcacatccatcagcgccattttgctttgctttctcacactcattcaagaatgtattgaatgcatcctcgacatatttaactgcgtc |
323 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
2830684 |
cacaatcaacaatatcacatccatcagctccattttgcttggctttctcacactcattcaaaaatgtattgaatgcatcctcggcatatttaactgcgtc |
2830585 |
T |
|
| Q |
324 |
caaaacacacaggttct |
340 |
Q |
| |
|
| ||||||||| ||||| |
|
|
| T |
2830584 |
cgaaacacacatgttct |
2830568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 92
Target Start/End: Original strand, 41660556 - 41660616
Alignment:
| Q |
31 |
tcattattggaaggtgaatataaacttcatattcaggatagcttc-attggcagtattgccaa |
92 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||||||| |||| |||||||||||| |
|
|
| T |
41660556 |
tcattattggaaggtgaatat--acttcttattcaggatagcttctattgacagtattgccaa |
41660616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University