View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13985_high_21 (Length: 333)
Name: NF13985_high_21
Description: NF13985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13985_high_21 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 9 - 333
Target Start/End: Complemental strand, 31881934 - 31881610
Alignment:
| Q |
9 |
gtagcataggttagggtgaaactcttcatctcattggagatgagtctagcaatatccacttccaacccctttataatgctccagatcaatggtacaatct |
108 |
Q |
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| T |
31881934 |
gtagcacaggttagggtgaaactcttcatctcattggagatgagtctagcaatatccacttccaacccctttataatactccagatcagtggtacaatct |
31881835 |
T |
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| Q |
109 |
tcatggtggtgtcggaagtgtggctcttaggcaccacattatgcactaagaactggaacaccacactagcattggcattcatatcagaataaagacactt |
208 |
Q |
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| T |
31881834 |
tcatggtggtgtcggaggtgtggctcttaggcaccacattatgcactaagaactggaacaccacattagcattggcattcatatcagaataaagacactt |
31881735 |
T |
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| Q |
209 |
ctgatatttcccagctgcattcttaaggaaccttcgatctttaagaaggatgtcattctcaatcttccgaaagttccaattacctttagcacatttgtca |
308 |
Q |
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| T |
31881734 |
atgatatttctcagctgcattcttgaggaaccttcgatctttgagaaggatgtcattctcaatcttccgaaagttctaattacctttagcacatttgtca |
31881635 |
T |
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| Q |
309 |
ccataggcatagagagtgggtacag |
333 |
Q |
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| T |
31881634 |
ccataggcacagagagtgggtacag |
31881610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 175
Target Start/End: Complemental strand, 15042667 - 15042573
Alignment:
| Q |
81 |
ataatgctccagatcaatggtacaatcttcatggtggtgtcggaagtgtggctcttaggcaccacattatgcactaagaactggaacaccacact |
175 |
Q |
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| T |
15042667 |
ataatgcaccagatcaatggggtgaccttcatggtagtgtcggaagtatggcttttaggcaacacattgtgcactataaacttgaacacaacact |
15042573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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