View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13985_high_22 (Length: 322)
Name: NF13985_high_22
Description: NF13985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13985_high_22 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] chr6 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 1135871 - 1136189
Alignment:
| Q |
1 |
ccctaatctttagttttggtttactcattggtatcaaactcactttctgtgttaaagatttttctttcaactttcaaatccaaaacttccaagatccatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1135871 |
ccctaatctttagttttggtttactcattggtatgacactcactttttgtgttaaagatttttctttcaactttcaaatccaaaacttccaagatccatc |
1135970 |
T |
|
| Q |
101 |
cttaagcctcaatccaccacctcatttttcatattctcctccaatattattatccaacatctcaaaaacatcatatgaccatgataaccaaaccaatatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1135971 |
cttaagcctcaatccaccacctcatttttcatattctcctccaatattattatccaacatctcaaaaacatcatatgaccatgataaccaaaccaatatt |
1136070 |
T |
|
| Q |
201 |
tctatcaaacaaaattgtccggctattactcataaccttacttcaaatggtttggaagaattattaaagattcctaaggctatgcatgacatgaacgagg |
300 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1136071 |
tctatcaaacaaaattgtccggc---tactcataaccttacttcaaatggtttggaagaattattaaagattcctaaggctatgcatgacatgaacgagg |
1136167 |
T |
|
| Q |
301 |
atgaattattttggagagcttc |
322 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
1136168 |
atgaattattttggagagcttc |
1136189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 1139079 - 1139400
Alignment:
| Q |
1 |
ccctaatctttagttttggtttactcattggtatcaaactcactttctgtgttaaagatttttctttcaactttcaaatccaaaacttccaagatccatc |
100 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||| ||||||||| ||||||||||||||||| |||||| |||||||||| || |||||||||||||| |
|
|
| T |
1139079 |
ccctaatctttggttttggtttactcatcggtatcacactcactttttgtgttaaagatttttcattcaacattcaaatccataaattccaagatccatc |
1139178 |
T |
|
| Q |
101 |
cttaagcctcaatccaccacctcatttttcatattctcctccaatattattatccaacatctcaaaaacatcatatgaccatgataaccaaaccaatatt |
200 |
Q |
| |
|
||| |||||||||||||||||| |||||||| |||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
1139179 |
ctttagcctcaatccaccacctgatttttcacattctcctccaatactactatccaacatctcaaaaacatcatatgaccaaaataaccaaaccaatatt |
1139278 |
T |
|
| Q |
201 |
tctatcaaacaaaattgtccggctattactcataaccttacttcaaatggtttggaagaattattaaagattcctaaggctatgcatgacatgaacgagg |
300 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1139279 |
tctatcaaacaaaattgttcggctattactcataaccttacttcaaatggattggaagaattattaaagattcctaaggctatgcatgacatgaatgagg |
1139378 |
T |
|
| Q |
301 |
atgaattattttggagagcttc |
322 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
1139379 |
atgaattattttggagagcttc |
1139400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 124; Significance: 9e-64; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 7 - 322
Target Start/End: Complemental strand, 54479643 - 54479337
Alignment:
| Q |
7 |
tctttagttttggtttactcattggtatcaaactcactttctgtgttaaagatttttctttcaactttcaaatccaaaacttccaagatccatccttaag |
106 |
Q |
| |
|
||||| ||| ||||||||||||||| |||| ||||||||| ||||| ||| || |||| |||||||||||||||||||| | ||||||||||||||| || |
|
|
| T |
54479643 |
tctttggttgtggtttactcattggcatcacactcactttgtgtgtcaaaaatatttcattcaactttcaaatccaaaaatcccaagatccatcctttag |
54479544 |
T |
|
| Q |
107 |
cctcaatccaccacctcatttttcatattctcctccaatattattatccaacatctcaaaaacatcatatgaccatgataaccaaaccaatatttctatc |
206 |
Q |
| |
|
| ||||||||||||||| | |||| |||||||||||||||||| || |||||| |||| |||| ||| |||||||||| |||||||||||| |
|
|
| T |
54479543 |
cttcaatccaccacctcgtgtttctcattctcctccaatattatcatacaacatttcaa---------atgagcattataaccaaacaaatatttctatc |
54479453 |
T |
|
| Q |
207 |
aaacaaaattgtccggctattactcataaccttacttcaaatggtttggaagaattattaaagattcctaaggctatgcatgacatgaacgaggatgaat |
306 |
Q |
| |
|
||| || |||| || | ||||| |||||||||||||| |||| ||| |||| || || |||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
54479452 |
aaaaaatattgcttggttgttactaataaccttacttcacatgggttgaaagacttgttgaagattcctatggctatgcatgacatgaatgaggatgaat |
54479353 |
T |
|
| Q |
307 |
tattttggagagcttc |
322 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
54479352 |
tgttttggagagcttc |
54479337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 238 - 322
Target Start/End: Complemental strand, 31269290 - 31269206
Alignment:
| Q |
238 |
ttacttcaaatggtttggaagaattattaaagattcctaaggctatgcatgacatgaacgaggatgaattattttggagagcttc |
322 |
Q |
| |
|
||||||||||||| ||||| ||||| || |||||||| | |||||||||||| ||||| || || |||||||||||||||||||| |
|
|
| T |
31269290 |
ttacttcaaatgggttggaggaatttttgaagattccaatggctatgcatgatatgaatgaagaggaattattttggagagcttc |
31269206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 116
Target Start/End: Complemental strand, 31269494 - 31269394
Alignment:
| Q |
16 |
ttggtttactcattggtatcaaactcactttctgtgttaaagatttttctttcaactttcaaatccaaaacttccaagatccatccttaagcctcaatcc |
115 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||| | ||| || |||| ||||| |||||| ||||| | || ||||||||| | || ||| ||||||| |
|
|
| T |
31269494 |
ttggtttactcattggtatcactctcactttttgtctcaaaaatgtttcattcaattttcaattccaacaatttcaagatccaccttttagcttcaatcc |
31269395 |
T |
|
| Q |
116 |
a |
116 |
Q |
| |
|
| |
|
|
| T |
31269394 |
a |
31269394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University