View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13985_high_3 (Length: 579)
Name: NF13985_high_3
Description: NF13985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13985_high_3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 10 - 579
Target Start/End: Original strand, 2816269 - 2816837
Alignment:
| Q |
10 |
agagagatgaaataagttaaaattacattcgggttgaagaaagcttacaaagaggactcaaatatcaacattcatacatattcggttccaatatacacat |
109 |
Q |
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| T |
2816269 |
agagagatgaaataagttaaaattatattcgggttgaagaaagcttacaaagaggactcaaatatcaacattcatacatattcggttccaatatacacat |
2816368 |
T |
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| Q |
110 |
ttaaattcattcaacacacacaatttcgatattcatacatatttattttctcatcaaagtcataaaaagtcatataagtcatgggagtcataattgctac |
209 |
Q |
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| T |
2816369 |
ttaaattcattcaacacacacaatttcgatattcatagatatttattttctcatcaaagtcataaaaagtcatctaagtcatgggagtcataattgctac |
2816468 |
T |
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| Q |
210 |
ggtatttaaataccgatatacgtcgttcatcagaaaaattaggaaaaatcaaaatacatagtcataataatgtcccctttctacgcgtgactcgaaacat |
309 |
Q |
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| T |
2816469 |
ggtatttaaataccgatatacgttgttcgtcagaaaaattgggaaaaatcaaaatacatagtcataataatgtcccctttctacgtgtgactcgaaacag |
2816568 |
T |
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| Q |
310 |
attgatcggctatgtttcatgggaaatttatttcataataccatatagatcatcataattttttatgccatccaacaccatggtctgaaccagcccgcat |
409 |
Q |
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| T |
2816569 |
attgatcggctatgtttcatgggaaatttatttcataataccatatagatcatcataattttttatgccat-cgacactatggtccgaaccagcccgcat |
2816667 |
T |
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| Q |
410 |
atctacaaagtgtccagagtataattttcattcttctcctatatcaacaccttcacattctcctgcaacgtaaccatcctgtgttctgttatgaggaaac |
509 |
Q |
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| T |
2816668 |
atctacaaagtgtccagagtatcattttcattcttctcctctatcaacaccttcacattctcctgcaaagtaaccatcccgtgttatgttatggggaaat |
2816767 |
T |
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| Q |
510 |
agaacatgcgagttctattatggtcaaggtgtatctggtcggaactgccaaacttgagtgatcaggagtt |
579 |
Q |
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| T |
2816768 |
agaacatgcatgttctattatgttcaaggcgtatctggtcgtaactcccaaacttgagcgatcaggagtt |
2816837 |
T |
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