View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13985_high_31 (Length: 240)
Name: NF13985_high_31
Description: NF13985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13985_high_31 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 1464663 - 1464442
Alignment:
| Q |
1 |
attgaatcagtcgcaaataaacattacatacgacactaacacgtagactctgataataattttaaaaaataaataaaagtgattgattgtaattatttgt |
100 |
Q |
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| T |
1464663 |
attgaatcagtcgcaaataaacattacatacgacactaacacgtagactctgataataattttaaaaaataaataaaagtgattgattgtaattatttgt |
1464564 |
T |
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| Q |
101 |
cggtgtaggacacagacacactttcacttgtaagtgtttatgccgcataattcattactcttcaacaataatttccacttctgaaatctttttcaaccat |
200 |
Q |
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| T |
1464563 |
cggtgtaggacacagacacactttcactcgtcagtgtttatgccgcataattcattactcttcaacaataatttccacttctgaaatctttttcaaccat |
1464464 |
T |
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| Q |
201 |
tcaattggcttaccttgccatt |
222 |
Q |
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| T |
1464463 |
tcaattggcttaccttgccatt |
1464442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 118 - 218
Target Start/End: Complemental strand, 26792250 - 26792158
Alignment:
| Q |
118 |
acactttcacttgtaagtgtttatgccgcataattcattactcttcaacaataatttccacttctgaaatctttttcaaccattcaattggcttaccttg |
217 |
Q |
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| T |
26792250 |
acactttcactcataagtgtttgtgatacataattcattactcttcaataataatttccactt--------tttttcaaccattcaagtggcttaccttg |
26792159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 26792289 - 26792253
Alignment:
| Q |
19 |
aaacattacatacgacactaacacgtagactctgata |
55 |
Q |
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| T |
26792289 |
aaacattagatacgacactgacacgtagactctgata |
26792253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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