View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13985_high_4 (Length: 557)

Name: NF13985_high_4
Description: NF13985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13985_high_4
NF13985_high_4
[»] chr2 (9 HSPs)
chr2 (1-540)||(11237630-11238169)
chr2 (141-525)||(7168415-7168789)
chr2 (286-522)||(7174233-7174469)
chr2 (212-525)||(7199764-7200077)
chr2 (410-477)||(7156176-7156243)
chr2 (410-477)||(7160738-7160805)
chr2 (276-468)||(6538843-6539035)
chr2 (37-107)||(7173914-7173985)
chr2 (410-483)||(33038154-33038227)
[»] scaffold0153 (1 HSPs)
scaffold0153 (1-90)||(29344-29433)
[»] chr3 (9 HSPs)
chr3 (410-477)||(4142118-4142185)
chr3 (409-475)||(23197014-23197080)
chr3 (424-477)||(2442039-2442092)
chr3 (424-477)||(4157942-4157995)
chr3 (410-477)||(771483-771550)
chr3 (410-477)||(2456249-2456316)
chr3 (426-476)||(2492083-2492133)
chr3 (424-477)||(12133097-12133150)
chr3 (425-477)||(3754600-3754652)
[»] chr7 (2 HSPs)
chr7 (411-477)||(1078145-1078211)
chr7 (416-474)||(24723357-24723415)
[»] chr5 (1 HSPs)
chr5 (425-477)||(11081813-11081865)
[»] chr6 (3 HSPs)
chr6 (415-525)||(4743834-4743944)
chr6 (415-524)||(4182990-4183099)
chr6 (428-473)||(9819831-9819876)
[»] chr1 (2 HSPs)
chr1 (415-525)||(51756739-51756849)
chr1 (415-521)||(51858562-51858668)
[»] scaffold0044 (1 HSPs)
scaffold0044 (410-483)||(89137-89210)


Alignment Details
Target: chr2 (Bit Score: 516; Significance: 0; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 1 - 540
Target Start/End: Complemental strand, 11238169 - 11237630
Alignment:
Q  1 aacaccacaattcctcaggcaacatatttcatggtctaataatgaacaataatccatgaattaatcagcaaacaaaaggtacataacacaaatagaaatt 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  11238169 aacaccacaattcctcaggcaacatatttcatcgtctaataatgaacaataatccatgaagtaatcagcaaacaaaaggtacataacacaaatagaaatt 11238070  T
Q  101 aacatacaggttgcagttagggagttgaagaatcccggttcttcataaacctcatgcacaagtgacataatatagcatataacatcctcattactacatg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  11238069 aacatacaggttgcagttagggagttgaagaatcccggttcttcataaacctcatgcacaagtgacataacatagcatataacatcctcattactacatg 11237970  T
Q  201 cattctactattattaagaacatggtgatatcaaactctcttggtagacttcaaggaccatccaacctttgatgtttggaaattcaagagttttagaagt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11237969 cattctactattattaagaacatggtgatatcaaactctcttggtagacttcaaggaccatccaacctttgatgtttggaaattcaagagttttagaagt 11237870  T
Q  301 accatctctagaattgtaaacgaccaactcgaactgattctccagcagcacctgatcatcctcagtaacataaagtgcattggtataaggacaatgccca 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  11237869 accatctctagaattgtaaacgaccaactcgaactgattctccagcagcacctgatcatcctcagtaacataaagtgcattggtataaggacaacgccca 11237770  T
Q  401 acattccctatgtaaggaacacggaacaatttagtccaagtttctctatttccatactcctccataagccaaacatcgaaaaaagtataactatgagcaa 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  11237769 acattccctatgtaaggaacacggaacaatttagtccaagtttctctatttccatactcctccataagccaaacatcgaaaaaagtatgactatgagcaa 11237670  T
Q  501 gaatgcacatgcgatccctcaacactgataaggtcttagt 540  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  11237669 gaatgcacatgcgatccctcaacactgctaaggtcttagt 11237630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 141 - 525
Target Start/End: Original strand, 7168415 - 7168789
Alignment:
Q  141 cttcataaacctcatgcacaagtgacataatatagcatataacatcctcattactacatgcattctactattattaagaacatggtgatatcaaactctc 240  Q
    |||||||||||||||||||||||||| ||| |||| || ||       ||||| ||||||||||||||  |||   |||||| |||||||||||||||||    
T  7168415 cttcataaacctcatgcacaagtgacgtaacatagtatcta-------cattattacatgcattctaccgtta---agaacaaggtgatatcaaactctc 7168504  T
Q  241 ttggtagacttcaaggaccatccaacctttgatgtttggaaattcaagagttttagaagtaccatctctagaattgtaaacgaccaactcgaactgattc 340  Q
     || || |||| | |||||| ||| |  ||||||| | ||| |||| |||||||| | ||||||||||||||||||||||| ||||||||    |||| |    
T  7168505 ctgataaacttgagggaccaaccaccgattgatgtgttgaatttcaggagttttaaacgtaccatctctagaattgtaaacaaccaactcagcttgatac 7168604  T
Q  341 tccagcagcacctgatcatcctcagtaacataaagtgcattggtataaggacaatgcccaacattccctatgtaaggaacacggaacaatttagtccaag 440  Q
    |  |||| ||| || ||||||||||||| ||||||||| ||||||||||||||   ||||||||  || ||||||||||| |||||||||||||||||||    
T  7168605 ttgagcaacacttggtcatcctcagtaagataaagtgccttggtataaggacatgacccaacatctcccatgtaaggaactcggaacaatttagtccaag 7168704  T
Q  441 tttctctatttccatactcctccataagccaaacatcgaaaaaagtataactatgagcaagaatgcacatgcgatccctcaacac 525  Q
      ||  |||||||||| |||| |||||||||||| ||  |||| |||| ||||||||||||||| |||| || ||||||||||||    
T  7168705 aatcgttatttccatattccttcataagccaaacgtctgaaaacgtatcactatgagcaagaatacacaagcaatccctcaacac 7168789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 286 - 522
Target Start/End: Original strand, 7174233 - 7174469
Alignment:
Q  286 aagagttttagaagtaccatctctagaattgtaaacgaccaactcgaactgattctccagcagcacctgatcatcctcagtaacataaagtgcattggta 385  Q
    |||||| ||| ||||||||||||||||||||||||| |||||||  | |  || ||| |||||||| ||||||||||||  |||||||||||| || |||    
T  7174233 aagagtcttaaaagtaccatctctagaattgtaaacaaccaacttcatcatatactctagcagcacttgatcatcctcataaacataaagtgcctttgta 7174332  T
Q  386 taaggacaatgcccaacattccctatgtaaggaacacggaacaatttagtccaagtttctctatttccatactcctccataagccaaacatcgaaaaaag 485  Q
    ||||||  |   ||||||   || ||||||||||||||||||||| |||||||||  |||  ||||||||| |||| ||||||||| |||||  ||||||    
T  7174333 taaggatcagaaccaacacctcccatgtaaggaacacggaacaatctagtccaagaatcttgatttccatattccttcataagccagacatctgaaaaag 7174432  T
Q  486 tataactatgagcaagaatgcacatgcgatccctcaa 522  Q
    ||| ||| | || ||| ||| ||| || |||||||||    
T  7174433 tattactgttagaaagtatggacaagcaatccctcaa 7174469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 212 - 525
Target Start/End: Original strand, 7199764 - 7200077
Alignment:
Q  212 tattaagaacatggtgatatcaaactctcttggtagacttcaaggaccatccaacctttgatgtttggaaattcaagagttttagaagtaccatctctag 311  Q
    |||||||||||  ||||||||||||||| |||||||||||   | ||||||||||| |   || || | | ||||||| | ||| |||||||||| ||||    
T  7199764 tattaagaacaaagtgatatcaaactctgttggtagacttgtggaaccatccaaccatctgtgctttggatttcaagactcttaaaagtaccatccctag 7199863  T
Q  312 aattgtaaacgaccaactcgaactgattctccagcagcacctgatcatcctcagtaacataaagtgcattggtataaggacaatgcccaacattccctat 411  Q
    |||||||||  |||||||   |||||  ||| |||||||| ||||||||||||  |||||||| ||| ||||||||||||| |   ||||||    | ||    
T  7199864 aattgtaaagaaccaactttgactgacactctagcagcacttgatcatcctcataaacataaaatgccttggtataaggaccagaaccaacaccttccat 7199963  T
Q  412 gtaaggaacacggaacaatttagtccaagtttctctatttccatactcctccataagccaaacatcgaaaaaagtataactatgagcaagaatgcacatg 511  Q
    ||||||||||||||||||| ||| |||||  | |  ||||||| |||||| ||||| |||||||||  |||| |||  |||||||  ||| | |||||||    
T  7199964 gtaaggaacacggaacaatctagcccaagaattttcatttccaaactccttcataacccaaacatcagaaaatgtaccactatgacaaagcaggcacatg 7200063  T
Q  512 cgatccctcaacac 525  Q
    | |||| |||||||    
T  7200064 caatccatcaacac 7200077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 410 - 477
Target Start/End: Original strand, 7156176 - 7156243
Alignment:
Q  410 atgtaaggaacacggaacaatttagtccaagtttctctatttccatactcctccataagccaaacatc 477  Q
    ||||||||||||||||||||||||| |||||  |||  |||||||||||||| |||||||||||||||    
T  7156176 atgtaaggaacacggaacaatttagcccaagaatcttcatttccatactccttcataagccaaacatc 7156243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 410 - 477
Target Start/End: Original strand, 7160738 - 7160805
Alignment:
Q  410 atgtaaggaacacggaacaatttagtccaagtttctctatttccatactcctccataagccaaacatc 477  Q
    |||| ||||| ||||||||||||||||||||  ||  ||||||||||||||| |||||||||||||||    
T  7160738 atgtgaggaagacggaacaatttagtccaagaatcattatttccatactccttcataagccaaacatc 7160805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 276 - 468
Target Start/End: Complemental strand, 6539035 - 6538843
Alignment:
Q  276 ttggaaattcaagagttttagaagtaccatctctagaattgtaaacgaccaactcgaactgattctccagcagcacctgatcatcctcagtaacataaag 375  Q
    |||||| || |||||| ||| ||||||||||  ||||||||||||| |||||||   |||    ||| ||||||||||||| |||||||  |||||||||    
T  6539035 ttggaattttaagagtcttaaaagtaccatccgtagaattgtaaacaaccaactttgactttaactcgagcagcacctgattatcctcataaacataaag 6538936  T
Q  376 tgcattggtataaggacaatgcccaacattccctatgtaaggaacacggaacaatttagtccaagtttctctatttccatactcctccataag 468  Q
    ||| || | || |||| ||     ||||   || |||| || ||||| |||||||||||||||||  ||| ||||||||||||||| ||||||    
T  6538935 tgccttcgaatgaggataagaattaacacctcccatgttagaaacactgaacaatttagtccaagaatctttatttccatactccttcataag 6538843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 107
Target Start/End: Original strand, 7173914 - 7173985
Alignment:
Q  37 taataatgaacaataatccatgaattaatcagcaaacaaaaggtacataacacaaa-tagaaattaacatac 107  Q
    ||||||||||  |||||||||||| ||| ||||||||| |||| || ||||||||| || ||||||||||||    
T  7173914 taataatgaaagataatccatgaagtaaccagcaaacataaggcacctaacacaaattaaaaattaacatac 7173985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 483
Target Start/End: Complemental strand, 33038227 - 33038154
Alignment:
Q  410 atgtaaggaacacggaacaatttagtccaagtttctctatttccatactcctccataagccaaacatcgaaaaa 483  Q
    ||||||||||||||| ||||| |||||||||  | | | |||||||| |||| ||||| ||||||||| |||||    
T  33038227 atgtaaggaacacggtacaatctagtccaagactttttgtttccatattccttcataatccaaacatcaaaaaa 33038154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 66; Significance: 6e-29; HSPs: 1)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 29433 - 29344
Alignment:
Q  1 aacaccacaattcctcaggcaacatatttcatggtctaataatgaacaataatccatgaattaatcagcaaacaaaaggtacataacaca 90  Q
    |||| ||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||    
T  29433 aacatcacaatttctcaggcaacatatttcatcgtctaataacgaacaataatccatgaagtaaccagcaaacaaaaggtacataacaca 29344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 410 - 477
Target Start/End: Original strand, 4142118 - 4142185
Alignment:
Q  410 atgtaaggaacacggaacaatttagtccaagtttctctatttccatactcctccataagccaaacatc 477  Q
    |||||||||| |  |||||||||||||||||  ||| |||||||||| |||| |||||||||||||||    
T  4142118 atgtaaggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatc 4142185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 409 - 475
Target Start/End: Complemental strand, 23197080 - 23197014
Alignment:
Q  409 tatgtaaggaacacggaacaatttagtccaagtttctctatttccatactcctccataagccaaaca 475  Q
    ||||||||||| ||| |||||||||||||||| ||||  ||||||||| |||| ||| |||||||||    
T  23197080 tatgtaaggaatacgaaacaatttagtccaagattcttcatttccatattccttcatcagccaaaca 23197014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 424 - 477
Target Start/End: Complemental strand, 2442092 - 2442039
Alignment:
Q  424 gaacaatttagtccaagtttctctatttccatactcctccataagccaaacatc 477  Q
    |||||||||||||||||  ||| ||||||||||||||| ||||| |||||||||    
T  2442092 gaacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 2442039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 424 - 477
Target Start/End: Original strand, 4157942 - 4157995
Alignment:
Q  424 gaacaatttagtccaagtttctctatttccatactcctccataagccaaacatc 477  Q
    |||||||||||||||||  ||| |||||||||| |||| |||||||||||||||    
T  4157942 gaacaatttagtccaagactctttatttccatattccttcataagccaaacatc 4157995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 477
Target Start/End: Original strand, 771483 - 771550
Alignment:
Q  410 atgtaaggaacacggaacaatttagtccaagtttctctatttccatactcctccataagccaaacatc 477  Q
    |||||||||||  || |||||||||||||||  ||| |||||||||| |||| ||||| |||||||||    
T  771483 atgtaaggaacgtggtacaatttagtccaagagtctgtatttccatattccttcataacccaaacatc 771550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 477
Target Start/End: Complemental strand, 2456316 - 2456249
Alignment:
Q  410 atgtaaggaacacggaacaatttagtccaagtttctctatttccatactcctccataagccaaacatc 477  Q
    |||||||||| | || |||||||||||||||  ||| |||||||||| |||| ||||| |||||||||    
T  2456316 atgtaaggaatatggtacaatttagtccaagagtctttatttccatattccttcataacccaaacatc 2456249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 426 - 476
Target Start/End: Complemental strand, 2492133 - 2492083
Alignment:
Q  426 acaatttagtccaagtttctctatttccatactcctccataagccaaacat 476  Q
    |||||||||||||||  |||| |||||||||||||| ||||| ||||||||    
T  2492133 acaatttagtccaagactctcgatttccatactccttcataatccaaacat 2492083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 477
Target Start/End: Complemental strand, 12133150 - 12133097
Alignment:
Q  424 gaacaatttagtccaagtttctctatttccatactcctccataagccaaacatc 477  Q
    ||||||||||||||| |  ||||||||||||||||||  ||||| |||||||||    
T  12133150 gaacaatttagtccacgactctctatttccatactccctcataacccaaacatc 12133097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 425 - 477
Target Start/End: Complemental strand, 3754652 - 3754600
Alignment:
Q  425 aacaatttagtccaagtttctctatttccatactcctccataagccaaacatc 477  Q
    ||||||||||||||||  ||| |||||||||| |||| ||||| |||||||||    
T  3754652 aacaatttagtccaagactctttatttccatattccttcataacccaaacatc 3754600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 411 - 477
Target Start/End: Original strand, 1078145 - 1078211
Alignment:
Q  411 tgtaaggaacacggaacaatttagtccaagtttctctatttccatactcctccataagccaaacatc 477  Q
    |||||| ||||  ||||||||||||||| |  ||||||||||||||||||| ||||| |||||||||    
T  1078145 tgtaagaaacattgaacaatttagtccacgactctctatttccatactccttcataacccaaacatc 1078211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 416 - 474
Target Start/End: Complemental strand, 24723415 - 24723357
Alignment:
Q  416 ggaacacggaacaatttagtccaagtttctctatttccatactcctccataagccaaac 474  Q
    |||||| |||||||||||||||||| ||| ||||||  |||||||| ||||||||||||    
T  24723415 ggaacatggaacaatttagtccaagattcactatttatatactccttcataagccaaac 24723357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 425 - 477
Target Start/End: Complemental strand, 11081865 - 11081813
Alignment:
Q  425 aacaatttagtccaagtttctctatttccatactcctccataagccaaacatc 477  Q
    ||||||||||||||||  ||| ||||||||||||||| ||||| |||||||||    
T  11081865 aacaatttagtccaagactctttatttccatactccttcataacccaaacatc 11081813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 415 - 525
Target Start/End: Original strand, 4743834 - 4743944
Alignment:
Q  415 aggaacacggaacaatttagtccaagtttctctatttccatactcctccataagccaaacatcgaaaaaagtataactatgagcaagaatgcacatgcga 514  Q
    ||||||||  |||||||||||||||| || || ||||||||| |||| ||| | ||||||||| |||||  | | ||||| || || ||||||||  | |    
T  4743834 aggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatccaaacatcaaaaaacttgtcactattagaaaaaatgcacaaacaa 4743933  T
Q  515 tccctcaacac 525  Q
    |||||||||||    
T  4743934 tccctcaacac 4743944  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 524
Target Start/End: Original strand, 4182990 - 4183099
Alignment:
Q  415 aggaacacggaacaatttagtccaagtttctctatttccatactcctccataagccaaacatcgaaaaaagtataactatgagcaagaatgcacatgcga 514  Q
    ||||||||  |||||||||||||||| || || ||||||||| |||| ||| | ||||||||| |||||  | | ||||| || || ||||||||  | |    
T  4182990 aggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatccaaacatcaaaaaacttgtcactattagaaaaaatgcacaaacaa 4183089  T
Q  515 tccctcaaca 524  Q
    ||||||||||    
T  4183090 tccctcaaca 4183099  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 473
Target Start/End: Original strand, 9819831 - 9819876
Alignment:
Q  428 aatttagtccaagtttctctatttccatactcctccataagccaaa 473  Q
    |||||||||||||  |||||||||||||| |||| |||||||||||    
T  9819831 aatttagtccaagagtctctatttccatattccttcataagccaaa 9819876  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 415 - 525
Target Start/End: Original strand, 51756739 - 51756849
Alignment:
Q  415 aggaacacggaacaatttagtccaagtttctctatttccatactcctccataagccaaacatcgaaaaaagtataactatgagcaagaatgcacatgcga 514  Q
    ||||||||  |||||||||||||||| || || ||||||||| |||| ||| | ||||||||| |||||  | | ||| |||| || ||||||||  | |    
T  51756739 aggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatccaaacatcaaaaaacttgtcactttgagaaaaaatgcacaaacaa 51756838  T
Q  515 tccctcaacac 525  Q
    |||||||||||    
T  51756839 tccctcaacac 51756849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 415 - 521
Target Start/End: Complemental strand, 51858668 - 51858562
Alignment:
Q  415 aggaacacggaacaatttagtccaagtttctctatttccatactcctccataagccaaacatcgaaaaaagtataactatgagcaagaatgcacatgcga 514  Q
    ||||||||  |||||||||||||||| ||||  ||||||||| |||| ||| | |||||||||  ||||  | | |||||||| || |||||||| || |    
T  51858668 aggaacacttaacaatttagtccaagattctacatttccatattccttcatgatccaaacatcagaaaacttgtcactatgagaaaaaatgcacaagcaa 51858569  T
Q  515 tccctca 521  Q
    |||||||    
T  51858568 tccctca 51858562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 483
Target Start/End: Complemental strand, 89210 - 89137
Alignment:
Q  410 atgtaaggaacacggaacaatttagtccaagtttctctatttccatactcctccataagccaaacatcgaaaaa 483  Q
    ||||||||||||  | |||||||||||||||  ||| |||||||||| |||| ||||| ||||| ||| |||||    
T  89210 atgtaaggaacattgtacaatttagtccaagactctttatttccatattccttcataacccaaatatcaaaaaa 89137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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