View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13985_high_5 (Length: 512)
Name: NF13985_high_5
Description: NF13985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13985_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 16 - 310
Target Start/End: Complemental strand, 28711701 - 28711416
Alignment:
| Q |
16 |
gaagaagcgaaagtgacgtagatgatattaacatggtgaatgtttcgccgtcataaaatgtagtagctccccattgaaaaggatatggaaccacatatgg |
115 |
Q |
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| T |
28711701 |
gaagaagctaaaatgacgtagatgatattaacatggtgaatgtttcgccatcataaaatgtaggagctccccattgaaaaggatatggaaccacatatgg |
28711602 |
T |
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| Q |
116 |
gatagaatcagttaagtggtttcatttcatgatatgtttattgtgcacttttcttccatggaagttatgttcaactttgagatagaatccaaatgcggtt |
215 |
Q |
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| T |
28711601 |
gatagaatgagttaagtggtttcat-----gatatgtttattgtgcacttttcttccatggaagttatgttcaactttgagatagaatccaaatgcggta |
28711507 |
T |
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| Q |
216 |
tgtcatgtactatgttctcgtatacttccggcaagt--taaacctgcaccaacaccaacaccaaatagactctcttaattcattaaatttcttcccg |
310 |
Q |
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| T |
28711506 |
tttcatgtactatgttctcgtatacttccggcaagttataaacctg------caccaacaccaaatagactctcttaattcattaaatttcttcccg |
28711416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 340 - 471
Target Start/End: Complemental strand, 28711386 - 28711255
Alignment:
| Q |
340 |
gtatgctcaagtgactacttcaaaataactttaaataaggtcgctgcacaaattttggaaaatctcaaaatttaaaagaaaacgatgaatattccatttg |
439 |
Q |
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| T |
28711386 |
gtatgctcaagtgactacttcaaaataactttaaataaggtcgctgcacaaattttggaaaatctcaaaatttaaaagaaaacgatgaatattccatttg |
28711287 |
T |
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| Q |
440 |
aaaaagtatttctatgtcagcatggattgttt |
471 |
Q |
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| T |
28711286 |
aaaaagtatttctatgttagtatcgattgttt |
28711255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 344 - 434
Target Start/End: Complemental strand, 28705279 - 28705189
Alignment:
| Q |
344 |
gctcaagtgactacttcaaaataactttaaataaggtcgctgcacaaattttggaaaatctcaaaatttaaaagaaaacgatgaatattcc |
434 |
Q |
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| T |
28705279 |
gctcatgtgactacttcaaaataactattaataaggtcactgcacagattttggaaaatctcaaactttaaaagaaaacaatgaatattcc |
28705189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 362 - 443
Target Start/End: Complemental strand, 28716857 - 28716774
Alignment:
| Q |
362 |
aaataactttaaataaggtcgctgcacaaattttggaaaatctcaaaatttaaaagaaa--acgatgaatattccatttgaaaa |
443 |
Q |
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| T |
28716857 |
aaataacctttaataagttcaccgcacaaaatttggaagatctcaaactttaaaagaaattacgatgaatattccatttaaaaa |
28716774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 449
Target Start/End: Original strand, 29087341 - 29087406
Alignment:
| Q |
386 |
cacaaattttggaaaatctcaaaatttaaaa---gaaaacgatgaatattccatttgaaaaagtatt |
449 |
Q |
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| T |
29087341 |
cacaaattttggaaa-tctcaaactttaaaaaaagaaaactaggagtattccatttgaaaaagtatt |
29087406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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