View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13985_low_11 (Length: 427)
Name: NF13985_low_11
Description: NF13985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13985_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Original strand, 22990278 - 22990686
Alignment:
| Q |
1 |
actcatataggcaacaagtataatataattaccatcgaattcaccgacagcttgaaaaaga-tttgtcccaaatttaagcatgctgttcaaacaggtggg |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
22990278 |
actcatataggcaacaagtataatataattaccatcgaattcaccaacagcttgaaaaagaatttgtcccaaatttaagcatgctgttcaaacaagtggg |
22990377 |
T |
|
| Q |
100 |
catctgtggctgatgatccattccaagcaaagtcctcgtgttaattgcttctccattgacgagaaaattcacttgctgagggtttatcaggcatgcagat |
199 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||| |||||||||| |
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| T |
22990378 |
catctgtggctgatggtccattccaagcaaagtcctcgtgttaattgcttctccattcacgagaaaattcacatcctgagggtttatcaagcatgcagat |
22990477 |
T |
|
| Q |
200 |
gtctcaatatcctcggtttttgccaccaataaccaaattttgctat-cggactgatgattactcttttgtatattgaagtcaacaacagaagctccaaat |
298 |
Q |
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| T |
22990478 |
gtctcaatattatcagtttctgccaccaataaccaaaattttttattcggactgatgatttttcttttgtatattgaagtcaacaacagaagctccaaat |
22990577 |
T |
|
| Q |
299 |
ccagacttggcttcgattgaagcaataattggacccagtttcatacttggatagaatctttgcattatcatatttaataatgatgaagaatggtgagaaa |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22990578 |
ccagacttggcttcgattgaagcaataattggacccagtttcatacttggatagaatctttgcattatcatatttaataatgatgaagaatggtgagaaa |
22990677 |
T |
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| Q |
399 |
aacttggtc |
407 |
Q |
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|||| |||| |
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| T |
22990678 |
aactaggtc |
22990686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 31 - 108
Target Start/End: Complemental strand, 2538189 - 2538112
Alignment:
| Q |
31 |
accatcgaattcaccgacagcttgaaaaagatttgtcccaaatttaagcatgctgttcaaacaggtgggcatctgtgg |
108 |
Q |
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| T |
2538189 |
accatcgaactgacccacagcttgaagaagatttgtcccaaatttaaggataccagtcacacaggtgggcatctgtgg |
2538112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 2538309 - 2538281
Alignment:
| Q |
1 |
actcatataggcaacaagtataatataat |
29 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
2538309 |
actcatataggcaacaagtataatataat |
2538281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 167
Target Start/End: Complemental strand, 49516885 - 49516792
Alignment:
| Q |
74 |
ttaagcatgctgttcaaacaggtgggcatctgtggctgatgatccattccaagcaaagtcctcgtgttaattgcttctccattgacgagaaaat |
167 |
Q |
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|||||||| || |||| ||| |||| ||||||||| ||||||||||| |||| |||||| |||||||||| || |||||| | |||||||| |
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| T |
49516885 |
ttaagcatactattcacacaagtggtcatctgtggtccatgatccattcaaagcttagtccttgtgttaattgtttttccattcatgagaaaat |
49516792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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