View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13985_low_12 (Length: 418)
Name: NF13985_low_12
Description: NF13985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13985_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Original strand, 42529697 - 42530096
Alignment:
| Q |
1 |
tccaaagaagaagtgatcatattccaatcaagattatatccattgaggatggcttagttctcaaagaattcagttatctacattggaataaggaggtaga |
100 |
Q |
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| T |
42529697 |
tccaaagaagaagtgatcatattccaatcaagattatatccattgaggatggcttagttctcaaagaattcagttatctacattggaataaggaggtaga |
42529796 |
T |
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| Q |
101 |
cttcatagtgcaatgcaatgaaaagcttttagtcaagcaggacaatgtcaaccttcagattcttgacttacaaagttctaagctgacgccggtagtaagc |
200 |
Q |
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| T |
42529797 |
cttcatagtgcaatgcaatgaaaagcttttagtcaagcaggacaatgtcaaccttcagattcttgacttacaaagttctaagctgacgccggtagtaagc |
42529896 |
T |
|
| Q |
201 |
agaactgagttcatgaaaccaactatatttatccttctttacaagaaagagttattccttactctcataaaccgaacaatttctgtatggaactttcgtg |
300 |
Q |
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| T |
42529897 |
agaactgagttcatgaaaccaactatatttatccttctttacaagaaagagttattccttactctcataaaccgaacaatttctgtatggaactttcgtg |
42529996 |
T |
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| Q |
301 |
gagaactggttacatcattggaggatcacttgttacggcatccactatggcatgcacacttcaacttaaaccacaattacataacaagtgatcagaacct |
400 |
Q |
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| T |
42529997 |
gagaactggttacatcattggaggatcacttgttacgacatccactatggcatgcacacttcaacttaaaccacaattacataacaagtgatcagaacct |
42530096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 4 - 400
Target Start/End: Original strand, 42535422 - 42535812
Alignment:
| Q |
4 |
aaagaagaagtgatcatattccaatcaagattatatccattgaggatggcttagttctcaaagaattcagttatctacattggaataaggaggtagactt |
103 |
Q |
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| T |
42535422 |
aaagaacaagtgaccatattccagtcaagattatatccattgaggatggcaaagttctcaaacaattcaattgtctacattagaatagggaggtagacat |
42535521 |
T |
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| Q |
104 |
catagtgcaatgcaatgaaaagcttttagtcaagcaggacaatgtcaaccttcagattcttgacttacaaagttctaagctgacgccggtagtaagcaga |
203 |
Q |
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|| ||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||| |||| | | | | ||||||||| |
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| T |
42535522 |
gattgtg---tgcaatgaaaagcttctagtcatgcaggacaatgtcaaccttcagattcttgacttaccaagttttaagattatggcatcggtaagcaga |
42535618 |
T |
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| Q |
204 |
actgagttcatgaaaccaactatatttatccttctttacaagaaagagttattccttactctcataaaccgaacaatttctgtatggaactttcgtggag |
303 |
Q |
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| T |
42535619 |
actgagttcatgaacccatcaagatttatctttctatgcaagaaacagttattccttactctcaaaaaccaaacaaattttgtatggaactttcatggag |
42535718 |
T |
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| Q |
304 |
aactggttacatcattggaggatcacttgttacggcatccactatggcatgcacacttcaacttaaaccacaattacataacaagtgatcagaacct |
400 |
Q |
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| T |
42535719 |
aactggttacatcattggaggatcacttgttacggcatccactatggcatccagacttcaa---aaacaacaattacataacaagtgatcagaacct |
42535812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 8e-31; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 11 - 166
Target Start/End: Original strand, 27824628 - 27824786
Alignment:
| Q |
11 |
aagtgatcatattccaatcaagattatatccattgaggatggcttagttctcaaagaattcagttatctac---attggaataaggaggtagacttcata |
107 |
Q |
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||||| |||||||||| | || ||||||||||||||||||||| ||||||||||| ||||| | |||||| || |||||||| |||| ||||||||| |
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| T |
27824628 |
aagtggtcatattccactgaaaattatatccattgaggatggcacagttctcaaagcattcaatcatctactccatcggaataagaaggtggacttcata |
27824727 |
T |
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| Q |
108 |
gtgcaatgcaatgaaaagcttttagtcaagcaggacaatgtcaaccttcagattcttga |
166 |
Q |
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| T |
27824728 |
gagcaattcaatgaaaagcttctagtcaagcaggaaaatgagaaccttcaaattcttga |
27824786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 250 - 344
Target Start/End: Original strand, 27825681 - 27825775
Alignment:
| Q |
250 |
agttattccttactctcataaaccgaacaatttctgtatggaactttcgtggagaactggttacatcattggaggatcacttgttacggcatcca |
344 |
Q |
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|||||||||||||| ||| ||| |||||| ||||||| |||||||||||||| ||||| || |||||||| ||||||||||||||| |||||||| |
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| T |
27825681 |
agttattccttactttcagaaatcgaacagtttctgtctggaactttcgtggcgaacttgtcacatcatttgaggatcacttgttatggcatcca |
27825775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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