View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13985_low_14 (Length: 416)

Name: NF13985_low_14
Description: NF13985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13985_low_14
NF13985_low_14
[»] chr8 (12 HSPs)
chr8 (187-411)||(5194515-5194739)
chr8 (219-359)||(5199360-5199500)
chr8 (2-148)||(5201184-5201330)
chr8 (189-311)||(5184234-5184355)
chr8 (216-321)||(5197761-5197864)
chr8 (205-321)||(5175669-5175785)
chr8 (188-290)||(6233281-6233383)
chr8 (324-411)||(5177220-5177307)
chr8 (93-137)||(11678299-11678343)
chr8 (373-404)||(5199327-5199358)
chr8 (222-321)||(5204845-5204939)
chr8 (284-321)||(1796684-1796721)
[»] chr7 (1 HSPs)
chr7 (189-321)||(5178138-5178271)
[»] chr6 (1 HSPs)
chr6 (2-134)||(2030908-2031040)
[»] chr3 (2 HSPs)
chr3 (66-113)||(22350417-22350464)
chr3 (66-113)||(47327729-47327776)
[»] chr2 (2 HSPs)
chr2 (66-124)||(38908123-38908181)
chr2 (64-124)||(14849161-14849221)
[»] chr1 (1 HSPs)
chr1 (71-124)||(38548141-38548194)


Alignment Details
Target: chr8 (Bit Score: 153; Significance: 6e-81; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 187 - 411
Target Start/End: Original strand, 5194515 - 5194739
Alignment:
Q  187 ataaaaagcttgtcatatatgttttccttttatgtcaaacacatttcatttatgcttataatgtgtttggatcagttctttgagtaagaatgaattgcta 286  Q
    |||||| | ||||||| ||| |||||||||||| |||||||||||||||||||||||| |||||||||| ||| | ||||||||||||||| | ||||||    
T  5194515 ataaaaggtttgtcatctatattttccttttatatcaaacacatttcatttatgcttaaaatgtgtttgaatcgggtctttgagtaagaattatttgcta 5194614  T
Q  287 aaaacaggacaaagttgagtaaacaaaagattgatcagtttcttccttttctgatgtcgcatctgtttgaaggcagtaacccacaccattgcaatctatg 386  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||| ||||||||||||||||||| | |||||||||||||||||    
T  5194615 aaaacaggacaaagttgagtaaacaaaagattggtgagtttcttccttttctgacgtcgcctctgtttgaaggcagtaactcgcaccattgcaatctatg 5194714  T
Q  387 tttatattaattaccctatgcttct 411  Q
    |||||||||||||||||||| ||||    
T  5194715 tttatattaattaccctatgattct 5194739  T

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Target: chr8; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 219 - 359
Target Start/End: Complemental strand, 5199500 - 5199360
Alignment:
Q  219 tgtcaaacacatttcatttatgcttataatgtgtttggatcagttctttgagtaagaatgaattgctaaaaacaggacaaagttgagtaaacaaaagatt 318  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5199500 tgtcatacacatttcatttatgcttataatgtgtttggatcagttctttgagtaagaatgaattgctaaaaacaggacaaagttgagtaaacaaaagatt 5199401  T
Q  319 gatcagtttcttccttttctgatgtcgcatctgtttgaagg 359  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  5199400 gatcagtttcttccttttctgatgtcgcatctgtttgaagg 5199360  T

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Target: chr8; HSP #3
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 2 - 148
Target Start/End: Complemental strand, 5201330 - 5201184
Alignment:
Q  2 gaattttgtaatgccacccaacttattcgtccattgggaatgttgggtgatgggtaatattaataagaaaatccgtaacggtttgagaatgatttggcaa 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  5201330 gaattttgtaatgccacccaacttattcgtccattgggaatgttgggcgatgggtaatattaataagaaaatccgtaagggtttgagaatgatttggcaa 5201231  T
Q  102 gccgcaatttgggtcatttggaaggtgagaaatgagtttatttttaa 148  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||    
T  5201230 gccgcaatttgggtcatttggaaggcgagaaatgggtttatttttaa 5201184  T

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Target: chr8; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 189 - 311
Target Start/End: Original strand, 5184234 - 5184355
Alignment:
Q  189 aaaaagcttgtcatatatgttttccttttatgtcaaacacatttcatttatgcttataatgtgtttggatcagttctttgagtaagaatgaattgctaaa 288  Q
    |||||||||||||| | | |||||||| |||||||||||||||||||||||| ||| ||||||||  |||| ||||||||||||||||||||||||||||    
T  5184234 aaaaagcttgtcatctgt-ttttccttatatgtcaaacacatttcatttatggttaaaatgtgttacgatctgttctttgagtaagaatgaattgctaaa 5184332  T
Q  289 aacaggacaaagttgagtaaaca 311  Q
    ||||||||| | ||||| |||||    
T  5184333 aacaggacagaattgaggaaaca 5184355  T

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Target: chr8; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 216 - 321
Target Start/End: Complemental strand, 5197864 - 5197761
Alignment:
Q  216 ttatgtcaaacacatttcatttatgcttataatgtgtttggatcagttctttgagtaagaatgaattgctaaaaacaggacaaagttgagtaaacaaaag 315  Q
    |||||||||||||||| |||||||||||| |||||||||||||| |||||  |||||||||||||||| ||||| ||||||||| ||||||||||| |||    
T  5197864 ttatgtcaaacacattacatttatgcttaaaatgtgtttggatctgttct--gagtaagaatgaattggtaaaatcaggacaaaattgagtaaacataag 5197767  T
Q  316 attgat 321  Q
    ||||||    
T  5197766 attgat 5197761  T

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Target: chr8; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 205 - 321
Target Start/End: Original strand, 5175669 - 5175785
Alignment:
Q  205 atgttttccttttatgtcaaacacatttcatttatgcttataatgtgtttggatcagttctttgagtaagaatgaattgctaaaaacaggacaaagttga 304  Q
    ||||||||||||||||  |||||||||||||||||| ||| ||||||||  |||| ||||||||||||| |||||||| |||||||| ||||||| ||||    
T  5175669 atgttttccttttatgcgaaacacatttcatttatggttaaaatgtgttacgatctgttctttgagtaataatgaatttctaaaaactggacaaaattga 5175768  T
Q  305 gtaaacaaaagattgat 321  Q
    | ||||| |||||||||    
T  5175769 gcaaacagaagattgat 5175785  T

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Target: chr8; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 188 - 290
Target Start/End: Original strand, 6233281 - 6233383
Alignment:
Q  188 taaaaagcttgtcatatatgttttccttttatgtcaaacacatttcatttatgcttataatgtgtttggatcagttctttgagtaagaatgaattgctaa 287  Q
    |||||| ||||||||  ||||||||||||||||| |||||| | || |||||||||| |||||||| ||||| |||||||||||| ||| ||||| ||||    
T  6233281 taaaaaacttgtcatcgatgttttccttttatgttaaacacgtctcttttatgcttaaaatgtgttaggatccgttctttgagtatgaaagaattcctaa 6233380  T
Q  288 aaa 290  Q
    |||    
T  6233381 aaa 6233383  T

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Target: chr8; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 324 - 411
Target Start/End: Original strand, 5177220 - 5177307
Alignment:
Q  324 gtttcttccttttctgatgtcgcatctgtttgaaggcagtaacccacaccattgcaatctatgtttatattaattaccctatgcttct 411  Q
    |||||||||||||||||  || | |||||||| |||||||||| ||| |||||||||| |||| ||||||||||||||||||| ||||    
T  5177220 gtttcttccttttctgacatcacctctgtttggaggcagtaactcacgccattgcaatttatgcttatattaattaccctatgattct 5177307  T

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Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 137
Target Start/End: Original strand, 11678299 - 11678343
Alignment:
Q  93 atttggcaagccgcaatttgggtcatttggaaggtgagaaatgag 137  Q
    |||||||| |||| ||||||||| |||||||||||||||||||||    
T  11678299 atttggcatgccgtaatttgggtgatttggaaggtgagaaatgag 11678343  T

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Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 373 - 404
Target Start/End: Complemental strand, 5199358 - 5199327
Alignment:
Q  373 cattgcaatctatgtttatattaattacccta 404  Q
    ||||||||||||||||||||||||||||||||    
T  5199358 cattgcaatctatgtttatattaattacccta 5199327  T

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Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 321
Target Start/End: Original strand, 5204845 - 5204939
Alignment:
Q  222 caaacacatttcatttatgcttataatgtgtttggatcagttctttgagtaagaatgaattgctaaaaacaggacaaagttgagtaaacaaaagattgat 321  Q
    |||||||||| |||||||| ||  |||||||| |||||    || |||||||||| ||||| |||||||  ||||||| |||||||||||||||| ||||    
T  5204845 caaacacattgcatttatgtttgaaatgtgttaggatc----ctctgagtaagaaagaattcctaaaaattggacaaa-ttgagtaaacaaaagaatgat 5204939  T

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Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 321
Target Start/End: Complemental strand, 1796721 - 1796684
Alignment:
Q  284 ctaaaaacaggacaaagttgagtaaacaaaagattgat 321  Q
    |||||||||| ||||| |||||||||||||||||||||    
T  1796721 ctaaaaacagtacaaaattgagtaaacaaaagattgat 1796684  T

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Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 189 - 321
Target Start/End: Original strand, 5178138 - 5178271
Alignment:
Q  189 aaaaagcttgtcatatatgttttccttttatgtcaaacacatttcatttatgcttataatgtgtttggatcagttctttgagtaagaatg-aattgctaa 287  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||| ||||||||| ||||| |||    
T  5178138 aaaaagcttgtcatctatgttttccttttatgtcaaacacatttcatttatgcttaaaatgtgtttggatctgttatttgcgtaagaatgaaattgttaa 5178237  T
Q  288 aaacaggacaaagttgagtaaacaaaagattgat 321  Q
    |||||||||||| |||| ||||| ||||||||||    
T  5178238 aaacaggacaaaattgaataaacgaaagattgat 5178271  T

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Target: chr6 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 2 - 134
Target Start/End: Complemental strand, 2031040 - 2030908
Alignment:
Q  2 gaattttgtaatgccacccaacttattcgtccattgggaatgttgggtgatgggtaatattaataagaaaatccgtaacggtttgagaatgatttggcaa 101  Q
    ||||||||||||||||||||| |||||  |||||||||| ||||||| |  ||||  | |||||||||| ||||| || |||||||||||||||||||||    
T  2031040 gaattttgtaatgccacccaatttatttatccattgggagtgttgggcggggggtgctcttaataagaagatccggaagggtttgagaatgatttggcaa 2030941  T
Q  102 gccgcaatttgggtcatttggaaggtgagaaat 134  Q
    |  || |||||||| |||||||||| |||||||    
T  2030940 gttgctatttgggtgatttggaaggcgagaaat 2030908  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 66 - 113
Target Start/End: Original strand, 22350417 - 22350464
Alignment:
Q  66 aagaaaatccgtaacggtttgagaatgatttggcaagccgcaatttgg 113  Q
    ||||||||||| || || |||||||||||||||||||| |||||||||    
T  22350417 aagaaaatccggaaggggttgagaatgatttggcaagcggcaatttgg 22350464  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 66 - 113
Target Start/End: Original strand, 47327729 - 47327776
Alignment:
Q  66 aagaaaatccgtaacggtttgagaatgatttggcaagccgcaatttgg 113  Q
    ||||||||||| || || |||||||||||||||||||| |||||||||    
T  47327729 aagaaaatccggaaggggttgagaatgatttggcaagcggcaatttgg 47327776  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 124
Target Start/End: Original strand, 38908123 - 38908181
Alignment:
Q  66 aagaaaatccgtaacggtttgagaatgatttggcaagccgcaatttgggtcatttggaa 124  Q
    ||||||||||| || || |||||||||||| ||||||| || |||||||| ||||||||    
T  38908123 aagaaaatccggaaggggttgagaatgattaggcaagcagcgatttgggtgatttggaa 38908181  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 124
Target Start/End: Complemental strand, 14849221 - 14849161
Alignment:
Q  64 ataagaaaatccgtaacggtttgagaatgatttggcaagccgcaatttgggtcatttggaa 124  Q
    ||||||| ||||| |  |||| |||||||||||||||||||||  ||||||| ||||||||    
T  14849221 ataagaagatccggaggggttggagaatgatttggcaagccgccgtttgggttatttggaa 14849161  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 124
Target Start/End: Original strand, 38548141 - 38548194
Alignment:
Q  71 aatccgtaacggtttgagaatgatttggcaagccgcaatttgggtcatttggaa 124  Q
    |||||| || |||||||| |||||||||||||| ||||||||||| || |||||    
T  38548141 aatccggaaaggtttgaggatgatttggcaagcggcaatttgggttatgtggaa 38548194  T

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