View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13985_low_16 (Length: 395)
Name: NF13985_low_16
Description: NF13985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13985_low_16 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 197 - 352
Target Start/End: Original strand, 39669697 - 39669852
Alignment:
| Q |
197 |
aactaaaagtaaattagtgctatattatacacaaatttattttttagcatcggatcaatatatcacgttatatttcatctaattcagtggtgagattata |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
39669697 |
aactaaaagtaaattagtgctatattatacacaaatttattttttaacatcggatcaatatatcatgttatatctcatctaattcagtggtgagattata |
39669796 |
T |
|
| Q |
297 |
cattggatcaatacgtcaaatttattttctaacattggtacataatatatctcacc |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39669797 |
cattggatcaatacgtcaaatttattttctaacattggtacataatatatctcacc |
39669852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 43 - 171
Target Start/End: Original strand, 39668655 - 39668783
Alignment:
| Q |
43 |
ggttccatttgaaattgatatgttaaataaaataaaaggatttaatgcaaagcaggtttagtcgatgcggggacctacaataatcatcaattcaatttta |
142 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39668655 |
ggttccatttgaaattgatatgttaaataaaataaaaggatttaatgcaaagcaggtttagtcgatgcggggacctacaataatcatcaattcaatttta |
39668754 |
T |
|
| Q |
143 |
agcattattttgtagtctttgcctataca |
171 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
39668755 |
agcattattttgtagtctttgcctataca |
39668783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University