View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13985_low_18 (Length: 379)
Name: NF13985_low_18
Description: NF13985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13985_low_18 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 42449824 - 42450185
Alignment:
| Q |
1 |
agagtcaaaaacagaacccaaatcaaacccatcaccaccccacaaagacccagaaactgtcttcaacatcaatgcttgggaactcatggagggtcttgaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42449824 |
agagtcaaaaacagaacccaaatcaaacccatcaccaccccacaaagacccagaaactgtcttcaacatcaatgcttgggaactcatggagggtcttgaa |
42449923 |
T |
|
| Q |
101 |
gaaggggtacccatttcaaatttacccaagaaaagcccaaagtccgcaccttttcttcgtgggtttatggcttctgacacaagaagtccattgaagtttc |
200 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42449924 |
gaaggggtacccatttcaaattttcccaagaaaagcccaaagtccgcaccttttcttcgtgggtttatggcttctgacacaagaagtccattgaagtttc |
42450023 |
T |
|
| Q |
201 |
ttagtcaatatgggtctccaaaatctacacttaagaagccattggggaaagagaataaggttcaagttactaatatggtaagaggtggtgttagacgttt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42450024 |
ttagtcaatatgggtctccaaaatctacacttaagaagccattggggaaagagaataaggttcaagttactaatatggtaagaggtggtgttagacgttt |
42450123 |
T |
|
| Q |
301 |
ggattatagtcctaagggaattttgaaatctaccacaaattcttctcctaagaatttgaaag |
362 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42450124 |
ggattatagtcctaagggaattttgaaatctaccacaaattcttctcctaagaatttgaaag |
42450185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University