View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13985_low_19 (Length: 364)
Name: NF13985_low_19
Description: NF13985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13985_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 2 - 348
Target Start/End: Original strand, 25622447 - 25622793
Alignment:
| Q |
2 |
catcacaataatatatactatattcctcaataatacatgtgctcannnnnnnnatttgcatgcacctcccacgttttactcttaactactttcacactcc |
101 |
Q |
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| T |
25622447 |
catcacaataagatatactatattcctcaataatacatgtgctcattttttttatttgcatgcacctcccacgttttactcttaactactttcacactcc |
25622546 |
T |
|
| Q |
102 |
atcactttctcaacactctttgtatatatattttttatatgaagctaaattagtccagtcaaattgatatcggagggaattgaatttgagacgaagcata |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
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| T |
25622547 |
atcactttctcaacactctttgtatatatattttttatatgaagctaaattagtccagtcaaattgatatcagaggaaattgaatttgagacgaagcata |
25622646 |
T |
|
| Q |
202 |
ctcccaagttccaaataaataccactcgaccaacccaagtgagttcactctttgtatatattatataaggatcttcccggttctaacttcaaacaccatt |
301 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25622647 |
ctcccaagttccaaataaataccactcgactaacccaagtgagtttactctttgtatatattatataaggatcttcccggttctaacttcaaacaccatt |
25622746 |
T |
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| Q |
302 |
caacaacatcaaaaatcttcatatttgttctctttctttctctttta |
348 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25622747 |
caacaacatcaaaaatcttcatatttgttctctttctttctctttta |
25622793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 193
Target Start/End: Original strand, 16212925 - 16212987
Alignment:
| Q |
131 |
attttttatatgaagctaaattagtccagtcaaattgatatcggagggaattgaatttgagac |
193 |
Q |
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| T |
16212925 |
attttttttaagaagctaaattagtccatccaaattgataccggagtgaattgaacttgagac |
16212987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 26078075 - 26078123
Alignment:
| Q |
194 |
gaagcatactcccaagttccaaataaataccactcgaccaacccaagtg |
242 |
Q |
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||||||||||||||||| ||||| ||||||||| | |||||||||||| |
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| T |
26078075 |
gaagcatactcccaagtcccaaaccaataccactaggccaacccaagtg |
26078123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 38551818 - 38551766
Alignment:
| Q |
196 |
agcatactcccaagttccaaataaataccactcgaccaacccaagtgagttca |
248 |
Q |
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|||| |||||||| || ||||| ||||||| | |||||||||||||||||||| |
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| T |
38551818 |
agcacactcccaaatttcaaatcaataccattagaccaacccaagtgagttca |
38551766 |
T |
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