View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13985_low_2 (Length: 676)

Name: NF13985_low_2
Description: NF13985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13985_low_2
NF13985_low_2
[»] chr1 (22 HSPs)
chr1 (19-530)||(29059131-29059640)
chr1 (558-657)||(29059004-29059103)
chr1 (560-653)||(29052234-29052331)
chr1 (197-250)||(4859085-4859138)
chr1 (196-254)||(12852204-12852262)
chr1 (196-234)||(51067916-51067954)
chr1 (201-250)||(35527924-35527973)
chr1 (196-252)||(12213994-12214050)
chr1 (198-250)||(39949815-39949867)
chr1 (195-253)||(10356717-10356776)
chr1 (196-235)||(35690213-35690252)
chr1 (196-250)||(4770634-4770688)
chr1 (200-234)||(4799164-4799198)
chr1 (199-253)||(4897171-4897225)
chr1 (196-250)||(11410628-11410682)
chr1 (196-250)||(26256095-26256149)
chr1 (196-250)||(41677596-41677650)
chr1 (200-253)||(2884451-2884504)
chr1 (196-241)||(47835730-47835775)
chr1 (221-253)||(24170143-24170175)
chr1 (385-421)||(29052482-29052518)
chr1 (194-250)||(34083336-34083392)
[»] chr4 (11 HSPs)
chr4 (200-242)||(15023007-15023049)
chr4 (196-253)||(11949666-11949723)
chr4 (200-253)||(12588843-12588896)
chr4 (196-249)||(18635531-18635584)
chr4 (196-253)||(18903761-18903818)
chr4 (196-253)||(30135141-30135198)
chr4 (196-253)||(38939537-38939594)
chr4 (191-251)||(46779133-46779193)
chr4 (196-234)||(7371570-7371608)
chr4 (196-253)||(4911604-4911660)
chr4 (196-253)||(14202482-14202539)
[»] chr6 (6 HSPs)
chr6 (196-253)||(9311933-9311990)
chr6 (193-247)||(10787642-10787695)
chr6 (200-249)||(20713104-20713153)
chr6 (205-253)||(8138461-8138509)
chr6 (191-252)||(24248161-24248222)
chr6 (198-250)||(2445302-2445354)
[»] chr3 (21 HSPs)
chr3 (196-253)||(40644631-40644688)
chr3 (189-235)||(39100437-39100483)
chr3 (196-252)||(3612186-3612242)
chr3 (196-244)||(11574254-11574302)
chr3 (196-235)||(38573594-38573633)
chr3 (196-234)||(10843803-10843841)
chr3 (196-250)||(17588363-17588417)
chr3 (196-250)||(22486684-22486738)
chr3 (196-250)||(23882831-23882885)
chr3 (196-234)||(47099057-47099095)
chr3 (196-250)||(53633623-53633677)
chr3 (200-253)||(2186430-2186483)
chr3 (200-253)||(21160057-21160110)
chr3 (196-253)||(35126272-35126329)
chr3 (201-250)||(41151468-41151517)
chr3 (196-253)||(52340525-52340582)
chr3 (196-253)||(54243386-54243443)
chr3 (201-253)||(1111844-1111896)
chr3 (197-253)||(17755123-17755179)
chr3 (197-253)||(19056443-19056499)
chr3 (196-236)||(48673867-48673907)
[»] chr2 (13 HSPs)
chr2 (201-241)||(11764390-11764430)
chr2 (196-250)||(27934863-27934917)
chr2 (192-239)||(10991539-10991586)
chr2 (197-235)||(11846399-11846437)
chr2 (195-229)||(31935831-31935865)
chr2 (196-241)||(8775271-8775316)
chr2 (196-253)||(10195665-10195722)
chr2 (196-249)||(16204824-16204877)
chr2 (200-253)||(17842715-17842768)
chr2 (196-253)||(41165436-41165493)
chr2 (194-234)||(5168601-5168641)
chr2 (196-232)||(9718395-9718431)
chr2 (198-250)||(12619347-12619399)
[»] chr8 (6 HSPs)
chr8 (206-253)||(9727349-9727396)
chr8 (196-250)||(19701350-19701404)
chr8 (205-253)||(3757960-3758008)
chr8 (196-249)||(17913934-17913987)
chr8 (196-253)||(28439960-28440017)
chr8 (197-253)||(29546895-29546951)
[»] chr5 (10 HSPs)
chr5 (196-255)||(36623175-36623234)
chr5 (197-241)||(10045334-10045378)
chr5 (205-253)||(16094067-16094115)
chr5 (200-235)||(42178826-42178861)
chr5 (196-250)||(23118057-23118111)
chr5 (205-250)||(2705522-2705567)
chr5 (200-253)||(5614770-5614823)
chr5 (196-253)||(13864345-13864402)
chr5 (193-234)||(31159427-31159468)
chr5 (196-253)||(36170056-36170113)
[»] chr7 (12 HSPs)
chr7 (196-253)||(24614696-24614753)
chr7 (196-253)||(34000263-34000320)
chr7 (195-239)||(15015241-15015285)
chr7 (196-234)||(429200-429238)
chr7 (200-250)||(31723410-31723460)
chr7 (197-235)||(46856083-46856121)
chr7 (196-253)||(5458074-5458131)
chr7 (196-253)||(5526726-5526783)
chr7 (196-253)||(25251511-25251568)
chr7 (196-253)||(37230031-37230088)
chr7 (196-253)||(43539107-43539164)
chr7 (194-234)||(32855519-32855559)
[»] scaffold0070 (1 HSPs)
scaffold0070 (198-234)||(42954-42990)
[»] scaffold1064 (1 HSPs)
scaffold1064 (196-253)||(652-709)


Alignment Details
Target: chr1 (Bit Score: 440; Significance: 0; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 19 - 530
Target Start/End: Complemental strand, 29059640 - 29059131
Alignment:
Q  19 tagattgcacctagtgtctcagcaggtacaggatacatgtacttgggtgtggtctcaatgaaatgaatctacacatccactgtctagtcctcatatcatt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29059640 tagattgcacctagtgtctcagcaggtacaggatacatgtacttgggtgtggtctcaatgaaatgaatctacacatccactgtctagtcctcatatcatt 29059541  T
Q  119 atctcagatgtatgatatgaatatgatagccttaaaatccttaatcattaagttagaaaacacactgggctgtcccatgagcttaactcagttgataaga 218  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  | || |||||||||||||||| ||||||| |||||    
T  29059540 atctcagatgtatgatatgaatgtgatagccttaaaatccttaatcattaagttagaaaacac--taggttgtcccatgagcttaattcagttggtaaga 29059443  T
Q  219 ataatacataatatatataagatctggggttcaaaaatagaaaatagagggtgctcctaaaacaaaggttagaaattatagcatgattaggtaaataaag 318  Q
    ||||| ||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29059442 ataatgcataatatatataagatctaggattcaaatatagaaaatagagggtgctcctaaaacaaaggttagaaattatagcatgattaggtaaataaag 29059343  T
Q  319 attattgaactttgaagtggctatattaaatattagtactagcatgaaaggtatatggaacatgatatatgtcattttacccaaaggcttctctaccaca 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29059342 attattgaactttgaagtggctatattaaatattagtactagcatgaaaggtatatggaacatgatatatgtcattttacccaaaggcttctctaccaca 29059243  T
Q  419 ataggtatcttatannnnnnnagggagacacatattttacaatttgtatatttggtatggtgaatctctaagtataagaaatcctaaaggagcaatataa 518  Q
    ||||||||||||||       |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29059242 ataggtatcttatatttttttagggagacacgtattttacaatttgtatatttggtatggtgaatctctaagtataagaaatcctaaaggagcaatataa 29059143  T
Q  519 tttgtgaatgga 530  Q
    ||||||||||||    
T  29059142 tttgtgaatgga 29059131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 558 - 657
Target Start/End: Complemental strand, 29059103 - 29059004
Alignment:
Q  558 gcctaatctataactgaccaattctacataattcactcttttgaagggtctctgtccctctatcaataggcttacaagtaattattttttggtcaccgtc 657  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29059103 gcctaatctataactgaccaattctacataattcactcttttgaagggtctctgtccctctatcaataggcttacaagtaattattttttggtcaccgtc 29059004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 560 - 653
Target Start/End: Complemental strand, 29052331 - 29052234
Alignment:
Q  560 ctaatctataactgaccaattctacataattcactcttttgaagg----gtctctgtccctctatcaataggcttacaagtaattattttttggtcac 653  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||     ||||| |||||||||||||||||||||  | |||||||||||||||||    
T  29052331 ctaatctataactgaccaattctacataatccactcttttaaaggcctcatctctatccctctatcaataggcttactgggaattattttttggtcac 29052234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 197 - 250
Target Start/End: Original strand, 4859085 - 4859138
Alignment:
Q  197 gagcttaactcagttgataagaataatacataatatatataagatctggggttc 250  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  4859085 gagcttaactcagttgataagaataatacataatatatgtaaggtctggggttc 4859138  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 254
Target Start/End: Complemental strand, 12852262 - 12852204
Alignment:
Q  196 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaaa 254  Q
    |||| |||||||||||| || | ||||| |||||||||| |||||||||||||||||||    
T  12852262 tgaggttaactcagttggtagggataatgcataatatatgtaagatctggggttcaaaa 12852204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 234
Target Start/End: Complemental strand, 51067954 - 51067916
Alignment:
Q  196 tgagcttaactcagttgataagaataatacataatatat 234  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  51067954 tgagcttaactcagttggtaagaataatacataatatat 51067916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 201 - 250
Target Start/End: Original strand, 35527924 - 35527973
Alignment:
Q  201 ttaactcagttgataagaataatacataatatatataagatctggggttc 250  Q
    |||||||||||||||| |||||| ||||||||||||||| | ||||||||    
T  35527924 ttaactcagttgataaaaataatgcataatatatataaggtttggggttc 35527973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 196 - 252
Target Start/End: Original strand, 12213994 - 12214050
Alignment:
Q  196 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaa 252  Q
    |||||||| ||||||||||| ||| ||||||||||||||  ||| ||||||||||||    
T  12213994 tgagcttagctcagttgataggaacaatacataatatatgcaaggtctggggttcaa 12214050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 198 - 250
Target Start/End: Original strand, 39949815 - 39949867
Alignment:
Q  198 agcttaactcagttgataagaataatacataatatatataagatctggggttc 250  Q
    ||||||||||||||| |||||| ||| ||||||||||| ||| ||||||||||    
T  39949815 agcttaactcagttggtaagaacaatgcataatatatacaaggtctggggttc 39949867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 253
Target Start/End: Complemental strand, 10356776 - 10356717
Alignment:
Q  195 atgagcttaactcagttgata-agaataatacataatatatataagatctggggttcaaa 253  Q
    ||||||||||||||||||||| |||| ||| ||||||||||  ||| |||||||||||||    
T  10356776 atgagcttaactcagttgatagagaaaaatgcataatatatgcaaggtctggggttcaaa 10356717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 235
Target Start/End: Original strand, 35690213 - 35690252
Alignment:
Q  196 tgagcttaactcagttgataagaataatacataatatata 235  Q
    ||||||||||||||||| || |||||||||||||||||||    
T  35690213 tgagcttaactcagttggtaggaataatacataatatata 35690252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 196 - 250
Target Start/End: Complemental strand, 4770688 - 4770634
Alignment:
Q  196 tgagcttaactcagttgataagaataatacataatatatataagatctggggttc 250  Q
    |||||||||||||||||||| ||| ||| ||| ||||||||||| |||| |||||    
T  4770688 tgagcttaactcagttgatatgaacaatgcatgatatatataaggtctgaggttc 4770634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 200 - 234
Target Start/End: Complemental strand, 4799198 - 4799164
Alignment:
Q  200 cttaactcagttgataagaataatacataatatat 234  Q
    |||||||||||||||||||||||| ||||||||||    
T  4799198 cttaactcagttgataagaataatccataatatat 4799164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 199 - 253
Target Start/End: Complemental strand, 4897225 - 4897171
Alignment:
Q  199 gcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 253  Q
    |||||||||||||| ||   | || ||||||||||||||||||||||||||||||    
T  4897225 gcttaactcagttgctatagacaagacataatatatataagatctggggttcaaa 4897171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 196 - 250
Target Start/End: Original strand, 11410628 - 11410682
Alignment:
Q  196 tgagcttaactcagttgataagaataatacataatatatataagatctggggttc 250  Q
    ||||||||||||||||| || ||| ||||||||| |||| |||| ||||||||||    
T  11410628 tgagcttaactcagttggtatgaacaatacataaaatatgtaaggtctggggttc 11410682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 196 - 250
Target Start/End: Complemental strand, 26256149 - 26256095
Alignment:
Q  196 tgagcttaactcagttgataagaataatacataatatatataagatctggggttc 250  Q
    ||||||||||||||||||||||  |||| ||||||||||  |||||| |||||||    
T  26256149 tgagcttaactcagttgataagggtaatgcataatatatgcaagatccggggttc 26256095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 196 - 250
Target Start/End: Complemental strand, 41677650 - 41677596
Alignment:
Q  196 tgagcttaactcagttgataagaataatacataatatatataagatctggggttc 250  Q
    |||||||| |||||||| |||| | |||||||||||||| ||||||| |||||||    
T  41677650 tgagcttagctcagttggtaaggacaatacataatatatgtaagatccggggttc 41677596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 253
Target Start/End: Complemental strand, 2884504 - 2884451
Alignment:
Q  200 cttaactcagttgataagaataatacataatatatataagatctggggttcaaa 253  Q
    |||||||||||||||| | | ||| ||||||||||| |||||| ||||||||||    
T  2884504 cttaactcagttgatatggacaatgcataatatatacaagatcgggggttcaaa 2884451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 241
Target Start/End: Complemental strand, 47835775 - 47835730
Alignment:
Q  196 tgagcttaactcagttgataagaataatacataatatatataagat 241  Q
    |||| |||||||||||||||| || ||||||||||||||| |||||    
T  47835775 tgagtttaactcagttgataaaaacaatacataatatatacaagat 47835730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 221 - 253
Target Start/End: Complemental strand, 24170175 - 24170143
Alignment:
Q  221 aatacataatatatataagatctggggttcaaa 253  Q
    |||||||||||||| ||||||||||||||||||    
T  24170175 aatacataatatatgtaagatctggggttcaaa 24170143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 385 - 421
Target Start/End: Complemental strand, 29052518 - 29052482
Alignment:
Q  385 atatgtcattttacccaaaggcttctctaccacaata 421  Q
    |||||||||||||||||| |||||||||| |||||||    
T  29052518 atatgtcattttacccaatggcttctctaacacaata 29052482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 194 - 250
Target Start/End: Original strand, 34083336 - 34083392
Alignment:
Q  194 catgagcttaactcagttgataagaataatacataatatatataagatctggggttc 250  Q
    |||||||||||||||| || |||||| ||| |||||||||| |||| | ||||||||    
T  34083336 catgagcttaactcagatggtaagaacaatgcataatatatgtaaggtttggggttc 34083392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 200 - 242
Target Start/End: Complemental strand, 15023049 - 15023007
Alignment:
Q  200 cttaactcagttgataagaataatacataatatatataagatc 242  Q
    ||||||||||||| |||||||||||||||||||||||||||||    
T  15023049 cttaactcagttgctaagaataatacataatatatataagatc 15023007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 253
Target Start/End: Complemental strand, 11949723 - 11949666
Alignment:
Q  196 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 253  Q
    |||||||| ||||||||||||||| ||||||||||||||| || ||  ||||||||||    
T  11949723 tgagcttagctcagttgataagaacaatacataatatatacaaaattcggggttcaaa 11949666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 253
Target Start/End: Complemental strand, 12588896 - 12588843
Alignment:
Q  200 cttaactcagttgataagaataatacataatatatataagatctggggttcaaa 253  Q
    ||||||||||||| || ||| ||||||||| |||||||||||||| ||||||||    
T  12588896 cttaactcagttggtatgaacaatacataaaatatataagatctgaggttcaaa 12588843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 249
Target Start/End: Original strand, 18635531 - 18635584
Alignment:
Q  196 tgagcttaactcagttgataagaataatacataatatatataagatctggggtt 249  Q
    |||||||||||||||||||||| | ||| ||||||||||| ||| |||||||||    
T  18635531 tgagcttaactcagttgataaggacaatgcataatatatacaaggtctggggtt 18635584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 253
Target Start/End: Complemental strand, 18903818 - 18903761
Alignment:
Q  196 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 253  Q
    |||| ||| |||||||||||| |||||| |||||||||| |||| |||||||||||||    
T  18903818 tgagtttagctcagttgataaaaataatgcataatatatgtaaggtctggggttcaaa 18903761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 253
Target Start/End: Original strand, 30135141 - 30135198
Alignment:
Q  196 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 253  Q
    |||||||||||||||||||||| ||||| |||||||||| | ||||| | ||||||||    
T  30135141 tgagcttaactcagttgataaggataatgcataatatatgtcagatccgaggttcaaa 30135198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 253
Target Start/End: Complemental strand, 38939594 - 38939537
Alignment:
Q  196 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 253  Q
    |||||| | ||||| ||||||| ||||| ||||||||||||||| |||||||||||||    
T  38939594 tgagctaagctcagctgataaggataatgcataatatatataaggtctggggttcaaa 38939537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 191 - 251
Target Start/End: Original strand, 46779133 - 46779193
Alignment:
Q  191 tcccatgagcttaactcagttgataagaataatacataatatatataagatctggggttca 251  Q
    |||| ||||||||||||| |||||| ||||||| | |||||||| |||||| |||||||||    
T  46779133 tcccgtgagcttaactcaattgataggaataatgcgtaatatatgtaagatttggggttca 46779193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 196 - 234
Target Start/End: Complemental strand, 7371608 - 7371570
Alignment:
Q  196 tgagcttaactcagttgataagaataatacataatatat 234  Q
    |||||||||||||||||||||| | ||||||||||||||    
T  7371608 tgagcttaactcagttgataaggacaatacataatatat 7371570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 253
Target Start/End: Complemental strand, 4911660 - 4911604
Alignment:
Q  196 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 253  Q
    |||||||||||||||||||||| || || |||||||||| |||| |||| ||||||||    
T  4911660 tgagcttaactcagttgataaggat-atgcataatatatgtaaggtctgaggttcaaa 4911604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 253
Target Start/End: Complemental strand, 14202539 - 14202482
Alignment:
Q  196 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 253  Q
    |||||||||||||||||||  | ||||| |||||||||| |||| || ||||||||||    
T  14202539 tgagcttaactcagttgatttggataatgcataatatatgtaaggtccggggttcaaa 14202482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 196 - 253
Target Start/End: Complemental strand, 9311990 - 9311933
Alignment:
Q  196 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 253  Q
    ||||||||||||||||| || |||||||||||||||||| |||||| || ||||||||    
T  9311990 tgagcttaactcagttggtatgaataatacataatatatgtaagatttgaggttcaaa 9311933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 193 - 247
Target Start/End: Complemental strand, 10787695 - 10787642
Alignment:
Q  193 ccatgagcttaactcagttgataagaataatacataatatatataagatctgggg 247  Q
    ||||||| |||||||||||||||| |||||| ||||||||||||||| |||||||    
T  10787695 ccatgaggttaactcagttgataa-aataatgcataatatatataaggtctgggg 10787642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 249
Target Start/End: Original strand, 20713104 - 20713153
Alignment:
Q  200 cttaactcagttgataagaataatacataatatatataagatctggggtt 249  Q
    ||||||||| |||||||| |||||| |||||||||||||||| |||||||    
T  20713104 cttaactcaattgataaggataatatataatatatataagatatggggtt 20713153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 205 - 253
Target Start/End: Complemental strand, 8138509 - 8138461
Alignment:
Q  205 ctcagttgataagaataatacataatatatataagatctggggttcaaa 253  Q
    ||||||||||||||| ||| |||||||||| |||| |||||||||||||    
T  8138509 ctcagttgataagaacaatgcataatatatgtaaggtctggggttcaaa 8138461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 252
Target Start/End: Original strand, 24248161 - 24248222
Alignment:
Q  191 tcccatgagcttaactcagttgataagaataatacataatatatataagatctggggttcaa 252  Q
    |||| |||||||| | |||||| |||| |||||||||||||||| |||| || |||||||||    
T  24248161 tcccgtgagcttagcacagttggtaaggataatacataatatatgtaaggtccggggttcaa 24248222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 198 - 250
Target Start/End: Original strand, 2445302 - 2445354
Alignment:
Q  198 agcttaactcagttgataagaataatacataatatatataagatctggggttc 250  Q
    |||||||||||||||||| ||| ||| ||||||||||| |||||  |||||||    
T  2445302 agcttaactcagttgatatgaacaatgcataatatatacaagattcggggttc 2445354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 196 - 253
Target Start/End: Original strand, 40644631 - 40644688
Alignment:
Q  196 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 253  Q
    |||| |||||||||||  |||||| || ||||||||||||||||||||||||||||||    
T  40644631 tgagtttaactcagtttgtaagaacaacacataatatatataagatctggggttcaaa 40644688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 189 - 235
Target Start/End: Complemental strand, 39100483 - 39100437
Alignment:
Q  189 tgtcccatgagcttaactcagttgataagaataatacataatatata 235  Q
    |||| |||||||||||||||||||||||||| ||| |||||||||||    
T  39100483 tgtcacatgagcttaactcagttgataagaacaatgcataatatata 39100437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 196 - 252
Target Start/End: Complemental strand, 3612242 - 3612186
Alignment:
Q  196 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaa 252  Q
    |||||||| ||||||||||| | ||||| ||||||||||||||| || |||||||||    
T  3612242 tgagcttagctcagttgatatggataatgcataatatatataagctccggggttcaa 3612186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 196 - 244
Target Start/End: Original strand, 11574254 - 11574302
Alignment:
Q  196 tgagcttaactcagttgataagaataatacataatatatataagatctg 244  Q
    |||||||||||||||||||||| ||||| ||||||||||| ||| ||||    
T  11574254 tgagcttaactcagttgataaggataatgcataatatatacaaggtctg 11574302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 235
Target Start/End: Complemental strand, 38573633 - 38573594
Alignment:
Q  196 tgagcttaactcagttgataagaataatacataatatata 235  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  38573633 tgagcttaactcagttgataagaacaatgcataatatata 38573594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 196 - 234
Target Start/End: Complemental strand, 10843841 - 10843803
Alignment:
Q  196 tgagcttaactcagttgataagaataatacataatatat 234  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  10843841 tgagcttaactcagttggtatgaataatacataatatat 10843803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 196 - 250
Target Start/End: Original strand, 17588363 - 17588417
Alignment:
Q  196 tgagcttaactcagttgataagaataatacataatatatataagatctggggttc 250  Q
    ||||||||||||||||| |||| | ||| ||||||||||  ||||||||||||||    
T  17588363 tgagcttaactcagttggtaaggacaatgcataatatatgcaagatctggggttc 17588417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 196 - 250
Target Start/End: Original strand, 22486684 - 22486738
Alignment:
Q  196 tgagcttaactcagttgataagaataatacataatatatataagatctggggttc 250  Q
    ||||||||||||||||| |||||| ||| ||||||||||  ||||| ||||||||    
T  22486684 tgagcttaactcagttggtaagaacaatgcataatatatgcaagatttggggttc 22486738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 196 - 250
Target Start/End: Original strand, 23882831 - 23882885
Alignment:
Q  196 tgagcttaactcagttgataagaataatacataatatatataagatctggggttc 250  Q
    |||||||| ||||||||||||| | ||| |||||||| |||||| ||||||||||    
T  23882831 tgagcttagctcagttgataaggacaattcataatatttataaggtctggggttc 23882885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 196 - 234
Target Start/End: Complemental strand, 47099095 - 47099057
Alignment:
Q  196 tgagcttaactcagttgataagaataatacataatatat 234  Q
    |||||||| ||||||||||||||||||| ||||||||||    
T  47099095 tgagcttagctcagttgataagaataatgcataatatat 47099057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 196 - 250
Target Start/End: Complemental strand, 53633677 - 53633623
Alignment:
Q  196 tgagcttaactcagttgataagaataatacataatatatataagatctggggttc 250  Q
    ||||||||||||||||| |||| ||||| |||||||||| |||| || |||||||    
T  53633677 tgagcttaactcagttggtaaggataatgcataatatatgtaaggtccggggttc 53633623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 253
Target Start/End: Complemental strand, 2186483 - 2186430
Alignment:
Q  200 cttaactcagttgataagaataatacataatatatataagatctggggttcaaa 253  Q
    ||||||||||||| || | | |||||||||||||| |||| |||||||||||||    
T  2186483 cttaactcagttggtatggacaatacataatatatgtaaggtctggggttcaaa 2186430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 253
Target Start/End: Original strand, 21160057 - 21160110
Alignment:
Q  200 cttaactcagttgataagaataatacataatatatataagatctggggttcaaa 253  Q
    |||||||||||||||| | ||||| |||||||||| |||| || ||||||||||    
T  21160057 cttaactcagttgatatggataatgcataatatatgtaaggtcgggggttcaaa 21160110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 253
Target Start/End: Complemental strand, 35126329 - 35126272
Alignment:
Q  196 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 253  Q
    |||| |||||||||||| || | ||||| ||||||||||  |||||||||||||||||    
T  35126329 tgagtttaactcagttggtagggataatgcataatatatgcaagatctggggttcaaa 35126272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 250
Target Start/End: Original strand, 41151468 - 41151517
Alignment:
Q  201 ttaactcagttgataagaataatacataatatatataagatctggggttc 250  Q
    |||||||||||| ||| ||||||||||||||||| | | |||||||||||    
T  41151468 ttaactcagttggtaaaaataatacataatatatgttaaatctggggttc 41151517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 253
Target Start/End: Original strand, 52340525 - 52340582
Alignment:
Q  196 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 253  Q
    |||||||||||||  || |||||| ||| |||||||||| |||||| |||||||||||    
T  52340525 tgagcttaactcaactgttaagaaaaattcataatatatgtaagatttggggttcaaa 52340582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 253
Target Start/End: Original strand, 54243386 - 54243443
Alignment:
Q  196 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 253  Q
    ||||||||||||||||| |||| |  || |||||||||| ||||||| ||||||||||    
T  54243386 tgagcttaactcagttggtaagcacgatgcataatatatttaagatccggggttcaaa 54243443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 201 - 253
Target Start/End: Complemental strand, 1111896 - 1111844
Alignment:
Q  201 ttaactcagttgataagaataatacataatatatataagatctggggttcaaa 253  Q
    ||||||||||||||| | | ||||||||||||||  ||| |||||||||||||    
T  1111896 ttaactcagttgatagggacaatacataatatatgcaaggtctggggttcaaa 1111844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 197 - 253
Target Start/End: Original strand, 17755123 - 17755179
Alignment:
Q  197 gagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 253  Q
    ||||||| ||||||||||| ||| |||||||||||||| |||| |  ||||||||||    
T  17755123 gagcttagctcagttgataggaacaatacataatatatgtaaggttcggggttcaaa 17755179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 197 - 253
Target Start/End: Original strand, 19056443 - 19056499
Alignment:
Q  197 gagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 253  Q
    ||||||| ||||||||||| ||| |||||||||||||| |||| |  ||||||||||    
T  19056443 gagcttagctcagttgataggaacaatacataatatatgtaaggttcggggttcaaa 19056499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 48673907 - 48673867
Alignment:
Q  196 tgagcttaactcagttgataagaataatacataatatatat 236  Q
    |||| |||||||||||| |||| ||||||||||||||||||    
T  48673907 tgagtttaactcagttggtaaggataatacataatatatat 48673867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 201 - 241
Target Start/End: Original strand, 11764390 - 11764430
Alignment:
Q  201 ttaactcagttgataagaataatacataatatatataagat 241  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  11764390 ttaactcagttgataagaataatgcataatatatataagat 11764430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 250
Target Start/End: Complemental strand, 27934917 - 27934863
Alignment:
Q  196 tgagcttaactcagttgataagaataatacataatatatataagatctggggttc 250  Q
    |||||||| |||||||| |||| | ||||||||||||||| ||||||||||||||    
T  27934917 tgagcttagctcagttggtaaggacaatacataatatatacaagatctggggttc 27934863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 239
Target Start/End: Original strand, 10991539 - 10991586
Alignment:
Q  192 cccatgagcttaactcagttgataagaataatacataatatatataag 239  Q
    ||||||||||||||||||||| |||| | |||||||||||||| ||||    
T  10991539 cccatgagcttaactcagttggtaaggacaatacataatatatgtaag 10991586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 197 - 235
Target Start/End: Original strand, 11846399 - 11846437
Alignment:
Q  197 gagcttaactcagttgataagaataatacataatatata 235  Q
    |||||||||||||||| || |||||||||||||||||||    
T  11846399 gagcttaactcagttggtaggaataatacataatatata 11846437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 195 - 229
Target Start/End: Complemental strand, 31935865 - 31935831
Alignment:
Q  195 atgagcttaactcagttgataagaataatacataa 229  Q
    |||| ||||||||||||||||||||||||||||||    
T  31935865 atgaacttaactcagttgataagaataatacataa 31935831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 241
Target Start/End: Original strand, 8775271 - 8775316
Alignment:
Q  196 tgagcttaactcagttgataagaataatacataatatatataagat 241  Q
    ||||||||  |||||||||| |||||||||||||||||| ||||||    
T  8775271 tgagcttaggtcagttgataggaataatacataatatatgtaagat 8775316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 253
Target Start/End: Complemental strand, 10195722 - 10195665
Alignment:
Q  196 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 253  Q
    |||||||| ||||||||||| | ||||| ||||||||||  ||||||||| |||||||    
T  10195722 tgagcttagctcagttgatatggataatgcataatatatgcaagatctggagttcaaa 10195665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 249
Target Start/End: Complemental strand, 16204877 - 16204824
Alignment:
Q  196 tgagcttaactcagttgataagaataatacataatatatataagatctggggtt 249  Q
    |||||||||||||||||||||| | ||| ||||||||||  ||| |||||||||    
T  16204877 tgagcttaactcagttgataaggacaatgcataatatatgcaaggtctggggtt 16204824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 253
Target Start/End: Complemental strand, 17842768 - 17842715
Alignment:
Q  200 cttaactcagttgataagaataatacataatatatataagatctggggttcaaa 253  Q
    ||||||| |||||||||||| ||| |||||||||| ||||||| || |||||||    
T  17842768 cttaacttagttgataagaacaatgcataatatatgtaagatccggagttcaaa 17842715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 253
Target Start/End: Original strand, 41165436 - 41165493
Alignment:
Q  196 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 253  Q
    ||||||||||||||||| || | ||||| ||||||||||||||| | || ||||||||    
T  41165436 tgagcttaactcagttgttatggataatgcataatatatataaggtatgaggttcaaa 41165493  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 194 - 234
Target Start/End: Complemental strand, 5168641 - 5168601
Alignment:
Q  194 catgagcttaactcagttgataagaataatacataatatat 234  Q
    |||||||||||||||||||||| | ||||| ||||||||||    
T  5168641 catgagcttaactcagttgatagggataatgcataatatat 5168601  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 196 - 232
Target Start/End: Original strand, 9718395 - 9718431
Alignment:
Q  196 tgagcttaactcagttgataagaataatacataatat 232  Q
    |||||||||||||||||||||||| ||| ||||||||    
T  9718395 tgagcttaactcagttgataagaacaatgcataatat 9718431  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 198 - 250
Target Start/End: Original strand, 12619347 - 12619399
Alignment:
Q  198 agcttaactcagttgataagaataatacataatatatataagatctggggttc 250  Q
    |||||| ||||||||||||  ||||| ||||||||||  ||||||||||||||    
T  12619347 agcttagctcagttgataatgataatgcataatatatgcaagatctggggttc 12619399  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 206 - 253
Target Start/End: Complemental strand, 9727396 - 9727349
Alignment:
Q  206 tcagttgataagaataatacataatatatataagatctggggttcaaa 253  Q
    |||||| ||||||||||| |||||||||||||||||| ||||||||||    
T  9727396 tcagttaataagaataatgcataatatatataagatcaggggttcaaa 9727349  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 250
Target Start/End: Complemental strand, 19701404 - 19701350
Alignment:
Q  196 tgagcttaactcagttgataagaataatacataatatatataagatctggggttc 250  Q
    |||| ||||||||||||||||| ||||| |||||||||| |||| ||||||||||    
T  19701404 tgagtttaactcagttgataaggataatgcataatatatgtaaggtctggggttc 19701350  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 205 - 253
Target Start/End: Complemental strand, 3758008 - 3757960
Alignment:
Q  205 ctcagttgataagaataatacataatatatataagatctggggttcaaa 253  Q
    ||||||||||| ||| ||| |||||||||| ||||||||||||||||||    
T  3758008 ctcagttgataggaacaatgcataatatatgtaagatctggggttcaaa 3757960  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 249
Target Start/End: Original strand, 17913934 - 17913987
Alignment:
Q  196 tgagcttaactcagttgataagaataatacataatatatataagatctggggtt 249  Q
    |||||||| ||||||||||||| |||||||||||| | | |||| |||||||||    
T  17913934 tgagcttagctcagttgataaggataatacataatgtttgtaaggtctggggtt 17913987  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 253
Target Start/End: Original strand, 28439960 - 28440017
Alignment:
Q  196 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 253  Q
    |||| |||| |||||||||||  ||||| |||||||||| |||| |||||||||||||    
T  28439960 tgagtttaattcagttgataaagataatgcataatatatgtaaggtctggggttcaaa 28440017  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 197 - 253
Target Start/End: Original strand, 29546895 - 29546951
Alignment:
Q  197 gagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 253  Q
    ||||||||||||||||||| | | |||| |||||||||  ||| |||||||||||||    
T  29546895 gagcttaactcagttgatagggacaatagataatatatgcaaggtctggggttcaaa 29546951  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 196 - 255
Target Start/End: Complemental strand, 36623234 - 36623175
Alignment:
Q  196 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaaaa 255  Q
    |||||||||||||||||||||||||||| ||||||||||  ||| ||| | |||||||||    
T  36623234 tgagcttaactcagttgataagaataatgcataatatatgcaaggtctagagttcaaaaa 36623175  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 10045334 - 10045378
Alignment:
Q  197 gagcttaactcagttgataagaataatacataatatatataagat 241  Q
    |||||||||||||||| |||  |||||||||||||||||||||||    
T  10045334 gagcttaactcagttggtaaagataatacataatatatataagat 10045378  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 205 - 253
Target Start/End: Original strand, 16094067 - 16094115
Alignment:
Q  205 ctcagttgataagaataatacataatatatataagatctggggttcaaa 253  Q
    ||||||||||| | ||||| |||||||||| ||||||||||||||||||    
T  16094067 ctcagttgatagggataatgcataatatatgtaagatctggggttcaaa 16094115  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 235
Target Start/End: Complemental strand, 42178861 - 42178826
Alignment:
Q  200 cttaactcagttgataagaataatacataatatata 235  Q
    ||||||||| ||||||||||||||||||||||||||    
T  42178861 cttaactcaattgataagaataatacataatatata 42178826  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 196 - 250
Target Start/End: Complemental strand, 23118111 - 23118057
Alignment:
Q  196 tgagcttaactcagttgataagaataatacataatatatataagatctggggttc 250  Q
    |||||||||||||||||||||| | ||| |||||||||| |||| | ||||||||    
T  23118111 tgagcttaactcagttgataaggacaatgcataatatatgtaaggtttggggttc 23118057  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 2705567 - 2705522
Alignment:
Q  205 ctcagttgataagaataatacataatatatataagatctggggttc 250  Q
    ||||||||||||||| |||||||||||||| |||| |||| |||||    
T  2705567 ctcagttgataagaacaatacataatatatgtaaggtctgaggttc 2705522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 253
Target Start/End: Original strand, 5614770 - 5614823
Alignment:
Q  200 cttaactcagttgataagaataatacataatatatataagatctggggttcaaa 253  Q
    |||||||||||||||| | ||||| |||||||||| |||| || ||||||||||    
T  5614770 cttaactcagttgatatggataatgcataatatatgtaaggtcgggggttcaaa 5614823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 253
Target Start/End: Original strand, 13864345 - 13864402
Alignment:
Q  196 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 253  Q
    ||||||||||||||||| || ||| ||||||||||||||  ||| || ||||||||||    
T  13864345 tgagcttaactcagttggtatgaacaatacataatatatgcaaggtccggggttcaaa 13864402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 234
Target Start/End: Original strand, 31159427 - 31159468
Alignment:
Q  193 ccatgagcttaactcagttgataagaataatacataatatat 234  Q
    ||||||||||||||||||||||||  | ||||||||||||||    
T  31159427 ccatgagcttaactcagttgataaagacaatacataatatat 31159468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 253
Target Start/End: Original strand, 36170056 - 36170113
Alignment:
Q  196 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 253  Q
    ||||||||||||| ||| || ||||||| |||||||||| |||||| || ||||||||    
T  36170056 tgagcttaactcaattgctaggaataatgcataatatatgtaagatatgaggttcaaa 36170113  T

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Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 253
Target Start/End: Original strand, 24614696 - 24614753
Alignment:
Q  196 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 253  Q
    |||| ||||||||||||||| ||||||| ||||||||||||||  ||||| |||||||    
T  24614696 tgagtttaactcagttgataggaataatgcataatatatataatgtctggagttcaaa 24614753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 253
Target Start/End: Original strand, 34000263 - 34000320
Alignment:
Q  196 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 253  Q
    |||||||||||||||||||||| ||||| |||||||||| |||| |  ||||||||||    
T  34000263 tgagcttaactcagttgataaggataatgcataatatatgtaaggttcggggttcaaa 34000320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 195 - 239
Target Start/End: Original strand, 15015241 - 15015285
Alignment:
Q  195 atgagcttaactcagttgataagaataatacataatatatataag 239  Q
    ||||||||||||||||||||||||| ||| |||||||||| ||||    
T  15015241 atgagcttaactcagttgataagaacaatgcataatatatgtaag 15015285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 196 - 234
Target Start/End: Complemental strand, 429238 - 429200
Alignment:
Q  196 tgagcttaactcagttgataagaataatacataatatat 234  Q
    |||||||||||||||||||| | ||||||||||||||||    
T  429238 tgagcttaactcagttgatatggataatacataatatat 429200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 200 - 250
Target Start/End: Complemental strand, 31723460 - 31723410
Alignment:
Q  200 cttaactcagttgataagaataatacataatatatataagatctggggttc 250  Q
    |||||||||||||||||||| |||| |||||||||  |||||||| |||||    
T  31723460 cttaactcagttgataagaacaatatataatatatgcaagatctgaggttc 31723410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 197 - 235
Target Start/End: Original strand, 46856083 - 46856121
Alignment:
Q  197 gagcttaactcagttgataagaataatacataatatata 235  Q
    |||| |||||||||||||| |||||||||||||||||||    
T  46856083 gagcctaactcagttgataggaataatacataatatata 46856121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 253
Target Start/End: Complemental strand, 5458131 - 5458074
Alignment:
Q  196 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 253  Q
    |||||||| ||||||||||||||| ||| ||||||||||  ||| |||||| ||||||    
T  5458131 tgagcttagctcagttgataagaacaatgcataatatatgcaaggtctgggattcaaa 5458074  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 253
Target Start/End: Original strand, 5526726 - 5526783
Alignment:
Q  196 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 253  Q
    |||||||| |||||||| || | | ||| ||||||||||||||||| |||||||||||    
T  5526726 tgagcttagctcagttggtatggacaatgcataatatatataagatttggggttcaaa 5526783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 253
Target Start/End: Original strand, 25251511 - 25251568
Alignment:
Q  196 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 253  Q
    ||||||||||||||||| ||  || ||| ||||||||||||||| | |||||||||||    
T  25251511 tgagcttaactcagttggtataaacaatgcataatatatataaggtttggggttcaaa 25251568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 253
Target Start/End: Complemental strand, 37230088 - 37230031
Alignment:
Q  196 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 253  Q
    ||||||||||||||||| |||| | ||| ||||||||||  ||| |||||||||||||    
T  37230088 tgagcttaactcagttggtaaggaaaatgcataatatatgcaaggtctggggttcaaa 37230031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 253
Target Start/End: Complemental strand, 43539164 - 43539107
Alignment:
Q  196 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 253  Q
    |||||||| ||||||||||| ||| ||| |||||||||| |||| || ||||||||||    
T  43539164 tgagcttagctcagttgataggaacaatgcataatatatgtaaggtccggggttcaaa 43539107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 194 - 234
Target Start/End: Original strand, 32855519 - 32855559
Alignment:
Q  194 catgagcttaactcagttgataagaataatacataatatat 234  Q
    ||||| |||||||||||||||| ||||||| ||||||||||    
T  32855519 catgaacttaactcagttgatatgaataatgcataatatat 32855559  T

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Target: scaffold0070 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 198 - 234
Target Start/End: Complemental strand, 42990 - 42954
Alignment:
Q  198 agcttaactcagttgataagaataatacataatatat 234  Q
    |||||||||||||||||||||||||| ||||||||||    
T  42990 agcttaactcagttgataagaataatgcataatatat 42954  T

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Target: scaffold1064 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1064
Description:

Target: scaffold1064; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 253
Target Start/End: Original strand, 652 - 709
Alignment:
Q  196 tgagcttaactcagttgataagaataatacataatatatataagatctggggttcaaa 253  Q
    ||||||||||||| ||| ||||||||| |||||| ||||| ||||| || ||||||||    
T  652 tgagcttaactcatttggtaagaataagacataaaatatacaagatttgaggttcaaa 709  T

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