View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13985_low_24 (Length: 280)
Name: NF13985_low_24
Description: NF13985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13985_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 146; Significance: 6e-77; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 5805356 - 5805168
Alignment:
| Q |
1 |
caacaatcttttgatcttgctgagaaagnnnnnnnttgatggaggagagaggattaacaagctagaaaatggggtttatgtggtaggacagtatgaatat |
100 |
Q |
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| T |
5805356 |
caacaatcttttgatcttgctgagaaagaagaaaattgatggaggagagaggattaacaagctagaaaatgggatttatgtggtaggacagtatgaatat |
5805257 |
T |
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| Q |
101 |
gtaaaaatgatgatgattatgattttgtgggtttggagattttggttgttgggatttgaaaacttg---tgttagataaatgaaagtga |
186 |
Q |
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| T |
5805256 |
gtaaaaatgatgatgattatgattttgtgggtttggagattttggttgttgggatttgaaaatttgtgttgttagataaatgaaagtga |
5805168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 11130570 - 11130369
Alignment:
| Q |
1 |
caacaatcttttgatcttgctgagaaagnnnnnnnttgatggaggagagaggattaacaagctagaaaatggggtttatgtggtaggacagtatgaat-- |
98 |
Q |
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| T |
11130570 |
caacaatcttttgatcttgctaagaaagaagaaaattgatggaggagagaggattaacaagctcgaaaatggggtttatgtggtagggcagtatgaattt |
11130471 |
T |
|
| Q |
99 |
-----------atgtaaaaatgatgatgattatgattttgtgggtttggagattttggttgttgggatttgaaaacttg---tgttagataaatgaaagt |
184 |
Q |
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| T |
11130470 |
ttaacatgatgatgtaaaaatgatgatgattatgattttgtgggtttggagattttggttgttgggatttgaaaatttgtgttgttagataaatgaaagt |
11130371 |
T |
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| Q |
185 |
ga |
186 |
Q |
| |
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|| |
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| T |
11130370 |
ga |
11130369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 104; Significance: 7e-52; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 36180113 - 36179911
Alignment:
| Q |
1 |
caacaatcttttgatcttgctgagaaa-gnnnnnnnttgatggaggagagaggattaacaagctagaaaatggggtttatgtggtaggacagtatgaat- |
98 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
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| T |
36180113 |
caacaatcttttgatcttgctgagaaaagaagaaaattgatggaggagagaggattaacaagctcgaaaatggggtttatgtggtagggcagtatgaatt |
36180014 |
T |
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| Q |
99 |
------------atgtaaaaatgatgatgattatgattttgtgggtttggagattttggttgttgggatttgaaaacttg---tgttagataaatgaaag |
183 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
36180013 |
tttaacatgatgatgtaaaaatgatgatgattatgattttgtgggtttggagattttggttgttgggatttgaaaatttgtgttgttagataaatgaaag |
36179914 |
T |
|
| Q |
184 |
tga |
186 |
Q |
| |
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||| |
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| T |
36179913 |
tga |
36179911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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