View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13985_low_25 (Length: 277)
Name: NF13985_low_25
Description: NF13985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13985_low_25 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 13 - 259
Target Start/End: Complemental strand, 16306991 - 16306745
Alignment:
| Q |
13 |
gataatactttaagcgacttcacaattttcatttgtttcttacagaaagaagtacaaagatggacttgtttttggaatggatttcggaagccgtgctacc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16306991 |
gataatactttaagcgacttcacaattttcatttgtttcttacagaaagaagtacaaagatggacttgtttttggaatggatttcggaagccgtgctacc |
16306892 |
T |
|
| Q |
113 |
tatttgctaggaaattcagtcccaaaacagaggagagtttgttaaagcttttttccaattattcatcttcatgagctggctaattttcctggaaatgaac |
212 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16306891 |
tatttgctaggaaattcagtcccgaaacagaggagagtttgttaaagcttttttccaattattcatcttcatgagctggctaattttcctggaaatgaac |
16306792 |
T |
|
| Q |
213 |
agaccatacaaaaataaaagagaaggaaattttcttaagcttattga |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16306791 |
agaccatacaaaaataaaagagaaggaaattttcttaagcttattga |
16306745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 28 - 179
Target Start/End: Complemental strand, 16296873 - 16296723
Alignment:
| Q |
28 |
gacttcacaattttcatttgtttcttacagaaagaagtacaaagatggacttgtttttggaatggatttcggaagccgtgctacctatttgctaggaaat |
127 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||| |||| |||| |||| || ||||||||| ||| ||||||||||||||||| |||||||||| |
|
|
| T |
16296873 |
gacttaacaattttcatttgtttctg-cagaaagaagtgcaaatatggccttgcttatggaatggaattcaaaagccgtgctacctattcgctaggaaat |
16296775 |
T |
|
| Q |
128 |
tcagtcccaaaacagaggagagtttgttaaagcttttttccaattattcatc |
179 |
Q |
| |
|
||||||| | |||||||| | ||| | ||||| || ||||||||| |||| |
|
|
| T |
16296774 |
tcagtcctgatacagaggacaatttactgaagctcttctccaattatacatc |
16296723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 130
Target Start/End: Original strand, 52960885 - 52960962
Alignment:
| Q |
53 |
tacagaaagaagtacaaagatggacttgtttttggaatggatttcggaagccgtgctacctatttgctaggaaattca |
130 |
Q |
| |
|
||||||||||||| ||||| ||| |||| || |||||||| ||| |||||| || |||||||||||||||||||||| |
|
|
| T |
52960885 |
tacagaaagaagtgcaaagttggccttgcttatggaatgggattcagaagccatgttacctatttgctaggaaattca |
52960962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University